RnoINT0053564 @ rn6
Intron Retention
Gene
ENSRNOG00000007242 | Ehmt1
Description
euchromatic histone lysine methyltransferase 1 [Source:RGD Symbol;Acc:1307588]
Coordinates
chr3:2021173-2025998:-
Coord C1 exon
chr3:2025861-2025998
Coord A exon
chr3:2021319-2025860
Coord C2 exon
chr3:2021173-2021318
Length
4542 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
GATGTGTCTGTGTGACTTAGGGC
3' ss Score
7.74
Exon sequences
Seq C1 exon
GTTCCGAGGCTTGTAAGTCATCCCCAGGAAGCATGGAGCAGGCAGCTCTGGGAGACAGCGCTGGGTATATGGAAGTTTCTCTGGATTCCCTGGATCTCCGTGTCAGAGGAATTCTGTCTTCCCAGACGGAAAACGAAG
Seq A exon
GTTGGTGTTGGAGTGTGACTACACCATCTTGCTTGCTTAGTGGGCTAGCTCTCCGTGTCAGCCTGATGCCCCCTGGTGGATAATAGGGGACAATTTGACAGAGCACTCAATATTTAAAAGGTGACTGAATAGACACGATGCAGATCATTTTCCAGGTCATTACCCGCTCAGGTGGGAAACAGAAAGTCTGAGAGCCCTCTAAGAGTGAAGCAGCGGAAGCCATTTGCATTGTTTGGGGTGTTGGTAATTGAGTTTCACACTGTGTTCCCAATTGTGAGCAGACATTCTTTGTGTGTGGGATCATTGACAAAAAGATGCCACCCTTGTCTGGATGTAATGGTATCTATGTTGTGTGGTATGCCTGTGAGTGATCTCTGATTTTAGCTCTAGTTAGTTGTAGCTTGTCTTCTAGCTTCTCTTGTGCTGACCTTGCTCTGATGTGTTTGCAGTGGAGTACAGCCTCCAGGCATGGGTACAGTAGTGTCTGCCATTGTCCCTGGATCATTGTGGCTTGCTCTCATTGTTTTCTGCCTGCTCCCCTCCTTTTAAGTCACTTAAAAACCTTCTAGCAAACAATGTTAAGGGAAAGTTTATAGACTCTACAGCCGTTTAGATTTTTAACATGGTTATGTTTATGGTTATATAGGGATTTAACAGTAAAGAGCAGACACCCAGCTTTTAAAATTTTAAACACTTAGGAAACTGTGATTTACTTTTGTAATTTAGTAATGTAGAAACCACATCTTTTGCTTCTCATATAAATCTTGGGTTTGTTCAAAGAAGTGATTGTTTTTTGTTTTTGTTTTCTTCTCACAAGTAGAGCACAAGCCTTTTCAAATTTCATAAAGCCCCATTGTAGGTAACTTGTATCTCTTTTCTAAGTTAAATAGACCCGTGTTTAAGTATTGTAAACGTCTAGATTTGGACGACTAGAAATTTAATTATAATCACGAAGTAATGTTTTATCAAATTAACCCAGTACTGTTCAGCAGACTCCTGCCTGTTGTAGGTGCGTTAAGAGGAGACTGTGAGGAGATTTAGGGCCCTTTTATGTAGAGATGTGCTGTTCCGTCTCTGATACAAGGGAAGGTCAGAGATAATAAATGCAGCTATAAAGGCTTAAGAGTGGCAGCACATCTAGAATGGTTGTATCCTGGTTCCTGAGACAGGCATGCAGGCAGGTGGGGGTGGGGTGGGATTGTAAAGTTGTTCCCTCGGGTTCTGTGGCATTCTGTAGATTGCCCTACCTGTGATCGATCAACACTGATCCATCAATCAGTGATTGGTTTGTGTACAGCAAATATGCTTTTGACTTTGAGAATCGGCACCTTGATGAGAAGCAGCATTGCCTGCTTGCCTTCATTTTTAAAGTGTGGAACTGGGAAACCTGAAGGTAGGTAGCGGGAGAGCAGGTATCTTGGGAAGTCGCTGAGGCTGGTGAGTGCATATGGTCCATCTAGTTTTGGTTCAAGAGGGTCTAGGCTTGAGCTGAGGACCTAAGTGAATATTTGTGTGTGGTTATAAATCATTGTTTGCCTTGTCTTTTCCCACCATTTTCGCTTGTAGGTGTGTGAAGGTAATAGGCTGAGCACTTGAGTTTGGGTAAAGACAGGAGATACAGACACTGGCAGTGTGGTGGTCAGGGGATCCCAAGCTCAGATGAGAGGTTGTGTGTGTTTACTCCTCTAGAGGTGCTGAGGTGTAGGAGAATGGAGGCAATCAGTGAGGCAGACTAAAGTCTCATCCAATAGCCAACTTTATTCAGAGCCTCAGACAGTTTATACTCTGAGGGTTGAGAGGAATCACTTGAGTAAGTGTACAATCACAAGGGTATGTCACACATGTGACATACTTGTAACAGGGAAGCCACACGGTCCATAGAGCCTTATAAATGATTACCAACAGTCAGTTGTGTTGAATAAGCTGGAGTAAACCCACTCCTCTCTACCAGGGAGGGCACGAAAGCACATTCCAGGAGCAGTTCTGTTTTTTGAAGAAACAGAAGTCACAAGGCTCTTATAGTGGTTTCTTGGAATTTTTCACAAGCACTCAGAAATCTCCTTCTACAGCTCCATTCTTGTGCACATATGAAGGCTGTGGCAGTTTCTCCTTTTAATGTCCCAGTAGTTCTTCAGTTGTAGAGATTGAAGCACACCCACATCTGTCTGTGTCGTTCAGACGGTGCTGCCCAGGAGTGTTCGCTCTTTCCGTCTCCTCAGTCTCCTCAGACACAGATGGTTAGTGTGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGCAGAGAGGGGCAGAGAGGCAGAGAGGCAGAGAGGCTGTGTGTGTGTGTGTGCTTATGTCTACACCAGGTTATTGAGCAGGAACTCCTCACAAACTCATACTTTCAGTGATTCTGGTTTGAGTTTTACTTTAGATTTTCTGATCTTTTGCTGTGAGTGGGAGATCTTGCAGCTAGATTTGTACGAAGTCAGTTTCCCCTTTCCACAGAAGTTTGCGGGACAGTGTTTTATTTAGTCTAGATGGTCTTGACTTCCCTGTGTTGTCAGTTTGGCCGGGGATTTCTGATGTTTCTGCCTCTTATCTCCTGATGGCTGTGACTATAGGCGTGTACGATGAGCCGCATTGTCTTCCCTGCTGAGGCTCCAACACAGGACTTGATGTTTGCTAGGATGACGTGCTGCCAGCTAAGCTTCCTTCTCAGCCCTGCCCATCATTTATGAGCCCTTCCCTTTGCGGAACTAGGTTGGCTAGGACCCAGAACACATTATCGAGAGGCCAGAGGTAAACAATAATTGGCTTCTTGGGGTAAAGGTGGATCCACCCCTGGGTTCAGCATAGCATTGCTAGAGACTGACTGAGGCATTATGTGTGCATGGAGAGTTTGAGTGCTTTGCAGACCAGGCAGTTAAACCAGAAGCAGTTCAGGGTTCAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGGTTTNGTGGGGGGGGGGGCAGGGAGTTCAGGGAAGGCTTGTGTTGAGCAAACTGGAAGTTGGGCAGAACAGTCAGTCATTTGGTTACAGTTATTTGTTTTGCTCTGTTGATGAGTCTGTGGATCAGTCACATAGTTGGCTCTGAGTAGTTGAGATTAACCTCTTCGTTTTTCTGTAATCCAGGCATTCCAAAGAAATTGCTCAAAATTCATTTTCATGAAATGAGGTGCTCAGGGTTCTTTGGGTATGGTCTCAATGAGAGTTACTGTAGTGGTCTTTAAATTAAATGTATTAATTACTTAATACTTGAGACAGAGTCCAGATATGTAGCATGGATGGATTGAAACTCTCTAAGTACTTTAGGGTGGCCTAGAACTCAAAAGAGATCTTCCTGTACCTGTCTCCACAGTGCTGGGATTAAAGGCCTGCACTGTCTTGTTGGGTCCTAGTCTATTTTTAGGTGCGAATTTTAGTTAATTATTTTTAGAGCTGCAGTACTGTTTCAAACTCAGTTCATCTTTTTTTTTTTTTTTTTTTTAAAGATTTATTTATTATAAAGACTGCAGCTGTCTTCAGACACACCAGAAGATGGTTGTGGGATTTAAACTTAGGATCTTTGGAAGAGCAGTCAGTGCTCCTAATCGCCAAGCCATCTCTCCAGCCCCTCAGTTCATCTTTTATCTCTGTTGTTTAACAAGAAAGAGGACATGGTCTGCTCCAATGTCTTTTGGAAGCAGCAGTCCTTGAAGCTACTAGTCAGATCCCATAGTCCTTTTTGCATATTCTGTCTGGAAGGGTGAGTTTAGCTTTGCAGTGCATAGGGTTTGCTTCATTCTTCCTGCTCTTGTTTTTCATTGTGGTATTAAGCACTGTTAGTATGAACATATTTGGTTGTCTGTCATCTATCATGTGTGTAGGCATGTGGGCCATAGCATGCATGTGTGGAGGTTAAAAGACAACTTTCAGCTCTTGGTTCTTTCCTACCACCGTGTGGGTCTTGGGGATTGAACTGAGGTGTTCAGGCTTGGCCACAAGTACTCTTACCCGACAGGCCATCGCACTGGCGCCAGCCACTCTCCTTTGTTTTCTCTCCTCAGTCTAGTATATGGATTGTTTGGTTGGTGAATACTATTCTAGGTAACTGTTAAACCATTATTAAAACCTTCTACATGGAATTTCTTTTTATGGGTGTAATTTAGAACCAAATGAGGGAAATAATGTCTCAGCATATAGTGAAATCTTTCCTTGCTTGAAAACTGAATTAAGGAATTGCTGATGAACTTGCAGCCTGACCTATGACATAGATATGTAGATATAAATGAATGAGGAGCTTTGGAGGATTTGGTAGCTGATATGCTTGTGGGTGATACAGTCTACTGCCTCTCATAGGATGTTGCAGAGGAGTCTGGAGCACTTGCCACTGAGCAGTGCTAATGTGTAACTCAGTGTATATAAGATCACTGTAAAGACTGTAATTGATTGTTCTCTGGACAACCCTTTGTAGGTCAGGGTTGCTTGAGCTGATGTGTCTGTGTGACTTAG
Seq C2 exon
GGCTGGCCAATGGTCCGGATGTGCTGGAGACGGATGGCCTCCATGAAGTGCCTCTCTGCAGCTGCCGCATGGAAACCCCCAAGAGCCGTGAGATCAGCACCCTGGCCAACAACCAGTGCATGGCCACTGAGAGCGTGGATCACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007242:ENSRNOT00000066777:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.736 A=NA C2=0.220
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]