DreINT0062597 @ danRer10
Intron Retention
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25991146-25991935:-
Coord C1 exon
chr20:25991860-25991935
Coord A exon
chr20:25991235-25991859
Coord C2 exon
chr20:25991146-25991234
Length
625 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TGTTCTTTAAATATTGACAGGAT
3' ss Score
5.99
Exon sequences
Seq C1 exon
GAAGCTTTGGAAATGATGATGCTGAAAAATCCCATCTTCTCCTGGAACCACCAACTAGCCAATTACCATTATGCAG
Seq A exon
GTAGAAAATTACAAAAACAAACTATATAGCAATGGGCCAGTGGCAGTGTTCACATCAGAAACGTTCACCCAGAAATGAACATGTAATCACCATGTACTCAACCTCAAAACTTTATGAGTTTCTTTTTTTCGTTAAACACAAAATAAGTTATTTTGAAGACTGTTAGAAACCTGTAACCATTGATATCCATATTTGAGAAAACATATGGTATGGAAGTCAGTGGTTACAGGTTTTCAGCGTTTTTCCAAATACTTCTTTTGTGTTCAACAGGAGAAAGAAACTCAAACAGGTTTGTAGGAAGTGAAGGGTGAGTAAGTGATGACAGAATTTGGAGATTTGGGAGAACTATCCCTTCAAGCTTGAATAAATGTCATTGCTGTGGCAGTAGGGTATGCCAGATATTGTTGTCTGTCATTGAATCAGCCATTCAAGAGATTTGATCGTAAATGCTGAAATGCTGATTCCTCCTTTGATTAAACCTGTGGTTTTAATATTCATATTATTTATGTTATTTTGGTTTTGTTTGGAATCGTGATCTTGTGAAAAAATGATTCTTTTTATAGTCTATAATGAGTTTATTTGTAATGCTTTATGGTAATGATTGATGTTCTTTAAATATTGACAG
Seq C2 exon
GATCAGACTATTGGAGTGCAGATGAAAAACGATACTTCAACAAGGGAATTTCTGCTTATACAAAAGATTTCTTCATGGTGCAAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445:ENSDART00000142611:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]