DreINT0062598 @ danRer10
Intron Retention
Gene
ENSDARG00000011445 | elmsan1a
Description
ELM2 and Myb/SANT-like domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-041001-151]
Coordinates
chr20:25990907-25991234:-
Coord C1 exon
chr20:25991146-25991234
Coord A exon
chr20:25991030-25991145
Coord C2 exon
chr20:25990907-25991029
Length
116 bp
Sequences
Splice sites
5' ss Seq
CTGGTATAC
5' ss Score
2.34
3' ss Seq
TGTGTGTCTGTTTTTGCCAGGTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
GATCAGACTATTGGAGTGCAGATGAAAAACGATACTTCAACAAGGGAATTTCTGCTTATACAAAAGATTTCTTCATGGTGCAAAAACTG
Seq A exon
GTATACAGCTTTTATATCTTTGGTCTAATGTTGTTCATACTGTACATGACTCGCCTAAATCATGTTTTCCATTTTTAAAGATTGTGTGTTTCTCTTTGTGTGTCTGTTTTTGCCAG
Seq C2 exon
GTGAGGACTAAAACTGTGGCACAGTGTGTGGAGTTCTACTACACCTATAAGAAACAAGCGAGGGTTACTCGTAATGGGACATGTACATATGGACCTTCAGATCCAGAAGAAAGCATCCCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011445:ENSDART00000142611:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.378
Domain overlap (PFAM):
C1:
PF0024926=Myb_DNA-binding=PU(60.9=93.3)
A:
NA
C2:
PF0024926=Myb_DNA-binding=PD(34.8=39.0)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACTATTGGAGTGCAGATGA
R:
CACAGGGATGCTTTCTTCTGGA
Band lengths:
210-326
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]