DreINT0063343 @ danRer10
Intron Retention
Gene
ENSDARG00000100666 | ep300a
Description
E1A binding protein p300 a [Source:ZFIN;Acc:ZDB-GENE-080403-16]
Coordinates
chr12:18811365-18811727:-
Coord C1 exon
chr12:18811614-18811727
Coord A exon
chr12:18811531-18811613
Coord C2 exon
chr12:18811365-18811530
Length
83 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
GTTTATTTGCTCTTTCTTAGGTT
3' ss Score
9.72
Exon sequences
Seq C1 exon
ACGGGTTTACATATCCTATTTGGACAGTGTCCACTTCTTTCAGCCACGCTTTTTAAGAACAGAGGTGTACCATGAAATCCTTATAGGATATCTTGATTATGCCAAAAGACAAGG
Seq A exon
GTAAGATGATACTACCAGGCTCAGTTCACATTGACTTGTGAAGTTCTTGATTAAGCCTTTTTTGTTTATTTGCTCTTTCTTAG
Seq C2 exon
GTTTACCACAGGACACATCTGGGCCTGCCCTCCTAGCGAAGGAGATGATTACATCTTCCATTGTCATCCTGCAGACCAGAAGATACCCAAGCCCAAGCGACTGCAAGAGTGGTATAAGAAGATGCTGGACAAAGCTGTCGCAGAGCGTGTTGTGCATGATTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100666:ENSDART00000172574:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(12.4=100)
A:
NA
C2:
PF082146=KAT11=FE(18.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCACTTCTTTCAGCCACG
R:
TGGGCTTGGGTATCTTCTGGT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]