GgaINT0114285 @ galGal3
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51673465-51675468:-
Coord C1 exon
chr1:51675355-51675468
Coord A exon
chr1:51673631-51675354
Coord C2 exon
chr1:51673465-51673630
Length
1724 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
3' ss Seq
TTTTTATCTAACGATGCTAGGTA
3' ss Score
6.16
Exon sequences
Seq C1 exon
GCGAGTGTATATATCTTACCTTGACAGTGTTCATTTCTTCCGCCCTAAATGCTTGAGGACTGCTGTCTATCATGAAATCCTAATTGGATATCTAGAATATGTCAAGAAATTAGG
Seq A exon
GTAAGTATGTTTTTTTTTAAAATGTTTCCTTCTGTGCAAATTTGTGTTCCATAGCTCTCACTGCAAGTTACTACCACCTATTATGCAGAATATGGTTCCAAATATCATACCGAGTGACAGAGTAAATTGGTAATACCTGTGTACAGGTGAGAAAGAAAAGACAAAAAGGAGATTAACAGGCCTTTCAGAAGAGGCTTGATTCACATACTTTAGGTATATAAAGAGTTTCCAGACTGATGTTAAACTTCCTTAAATCTAAGTAGAAAAATTAACCTTCCTGTCTGGGTTATAAAATTCTGCTGGCCTTGTTGATGGTGAACAGTACTTGTGAAATGCCACTGCTTCAATCGGGTCATTCCTTTGGGCTGGCAAGTTCTTACCCATGCTTGTTTGTGTGGAGAGAGGTAAGTTTCTTCTGTCTGCACTGATTAACTCTTACAGTTGTGCAAGGCTGCTAGGAAACCTCCTGCAGAAAGAGTAGTTCAAATTGTGAAAAACTGAAAAGTTAGAGGAGGGGGAGGAAATTATACACGGGACAGCGCAAAAGAACAGAAATTACATGAGGCAGCACAAAAGAGAATTTCAGAATAAGTGAAATAAGAAAGGTGGAAATGATCATGACTACTCAAGTAGAACAAGCAGTAAAATAAACATCAATCTAATGTCAAAGGTATCTGGTATCATTTGGCAGAGTTATTCATGAAGAAATTTTGGGGGATGAGTTGCATGAGAAGAATTGGGAGAGTCGGAATGGAGGCGGGTGGTACTGTACGGTTTTCAGTACTGCAGAGAAATGATGAATACGTGAACTTTGAAGGCATACTTTAGACTTTTCTTTACTGCTTATTGTATATTTCTGACCTGGGAATCTGTAAAACTGCTGCATGGAGCTCACGCCTCAGTTTTATTTAATGCTGTTTTCTGTGGAAAGGGTAACATCAGGTTCTCATTTGGGGAAAACAATTTTGGTCACGCAATATCATCTCTCCCTTCTCAGGCAGAAGGAATGACAACTGGCTGCAGTTCCTGGGGATTGGGTAGGGTTCTGCAGAGCTGTTTCTCAACACACCAAGGATGGTTATTTTTCTCTAACTTGAGATCTGATAATTCCTCTTATGGGAGTTATTTTTAAAAATCTAATATAGATGATCTGTGAATGAAGAAGTGATCTTCATCGTATTTTATTTTTTGCAGCTGCTACTATCTGGATGTCATTTGTCTTCATAGTACTTGTTTGTATATCCAATAGCTTAGGTTGACAGTGACTATTTTTTTATTCCCAGATATAATTGTGAAACCTTTTAAAACAGGTCTTCAAAATTAAAAAGGATCTACAGTAGAAAAATGAATTGTTCAAGTAAACGCGTTTTTAAAATGTTCCTAAGTAACAAATGATTGTGCTGTCTCCATCTTTCTCATTAGTTACCAGGTGGCACTTGCAGGCCTACTTTAGGCTTAGATTTTTACCTTGACTAGAAAGTGTGCGTGCTTTGATTTATTCTGCATATAGTGCTGAATTTCTAAAAGTCAGTGAAAAGATGCAAGTGTTATCTATGTGAATTAAGCTGGAATGAACACTAGAATTAAATCTTTGAGAGCTATTATTATCCATCTGTTAATGTCAGCCAACTCTGTGGTGGCTCCATCTCGTGGCGAAGAGGAAAGCAAGCTCTATTAATAACTATCAGAACCAACATGCACTGTTTTTTATCTAACGATGCTAG
Seq C2 exon
GTATACTACTGGACATATCTGGGCATGCCCACCAAGTGAAGGAGATGACTACATTTTCCATTGCCATCCTCCTGACCAAAAGATACCCAAACCCAAACGACTGCAAGAGTGGTACAAAAAGATGCTGGACAAATCTGTGTCAGAGCGCATTGTTCACGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(12.4=100)
A:
NA
C2:
PF082146=KAT11=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTGTATATATCTTACCTTGACA
R:
TGTAGTCGTGAACAATGCGCT
Band lengths:
278-2002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]