MmuINT0057776 @ mm10
Intron Retention
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81640440-81641425:+
Coord C1 exon
chr15:81640440-81640553
Coord A exon
chr15:81640554-81641259
Coord C2 exon
chr15:81641260-81641425
Length
706 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CTTTCTCTTTGTGTTTTTAGATA
3' ss Score
11.31
Exon sequences
Seq C1 exon
GAGGGTATACATATCTTACCTCGATAGTGTTCATTTCTTCCGTCCTAAATGCTTGCGGACTGCAGTCTATCATGAAATTCTAATTGGATATTTGGAATATGTCAAGAAATTAGG
Seq A exon
GTAAGCTTATTAAAAAGTGATATGTTGTAGAAAATGTATAATTATGTATTTTTGCTTTCTCGTGTTGGTTATGATACAGTGGAGCCATGAACTCAGTTTGTTAGATCTTCTGTGATATGAAGATGATATCACCATGCTTTAACTAATAAACCAATTCTTTTGTTCTGTTTTGTTGAAACTATTGATATTATTCATTTGGAAATAAAATGTTTTCTTGATCCTTTTATAATTGTGTGTAAAGACTAACAACATGCTGAATATGATACGTACAATCCCAGCCGTGTAGAGTACAAGTTCATTTATAGGTTAACATGTGCAGATAGTCCTTACCTAATCAATTCTGGAGAGTATTTGCCACCTAACTTATAGCAGTTCCCCTTACACTTAATTTTTAGGATGGGTTTCTTCCCTTTTTTGATCTTAAAATACAGACTTGAGGTTTTAGGATCAAGAACCAATTTCTGTAAATGAAATTTACAACATTCCTCAATGGCCTTTGAAAACAAGTAGTGGTATGAGAACTGTTAGTGCATCTGCTTTTGGGTCTTATTGAGAGTAAACATTTGTGTCCTTGTCTTTTTGCCTTGTTGTTTACCACGTACTGTGTGCAGTGGTTTGCACCTGTAGCCTCCACTACTCTAGGAGGACTACTGTAGCGTTTTCTAACACAAATGATATCTTGATGTCTTTCTCTTTGTGTTTTTAG
Seq C2 exon
ATACACAACAGGGCACATCTGGGCCTGTCCACCCAGTGAAGGGGATGACTATATCTTCCATTGCCATCCACCTGATCAGAAGATACCAAAGCCCAAGCGCCTGCAAGAATGGTACAAAAAGATGCTTGACAAGGCTGTATCAGAACGTATTGTCCATGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024:ENSMUST00000068387:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF082146=KAT11=FE(12.4=100)
A:
NA
C2:
PF082146=KAT11=FE(17.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTATACATATCTTACCTCGATAGT
R:
CTTGTAGTCATGGACAATACGTTCTG
Band lengths:
278-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types