DreINT0063547 @ danRer10
Intron Retention
Gene
ENSDARG00000101579 | epc1a
Description
enhancer of polycomb homolog 1 (Drosophila) a [Source:ZFIN;Acc:ZDB-GENE-070629-5]
Coordinates
chr12:40959644-40961306:+
Coord C1 exon
chr12:40959644-40959791
Coord A exon
chr12:40959792-40961147
Coord C2 exon
chr12:40961148-40961306
Length
1356 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
CATGATTTCTTTTCTCTCAGCCT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GAACACAGTGCCAGACTTTGGTTCGGAGGTGATGGCAGAAGCACTAGCAATGGCCAAACCTGTTTACAAGATTCCCATAATACCCTTCTCCAACAGCACTCAGTACCGCCATCAGGACCACATCGACTTTAAAGAATACAAGACCAAG
Seq A exon
GTGGGAAAGTCATGTCAAGAAATGGGCTGATATTACAGATTCTTCAGTTTGTGGCATTAAAATTGGTTGTAAATTTAGGTTTGGGTAAATAAATCAGGCTTAATTTTATTTTTGAGAGAGTTTTTTTTATTTGTTTATTTTTTATTGCATTCAGAAACAACGTAAAACTATCTGTAGTATTAAAATGAAACTGATGCAAGCGGATATTTGCAGATAAGCATTATAACAATGTATTTTAACTGCTCTTGTGTTTTATTAATTTAATGTAACTTTTACAGTTTTATTTATTTGAAAAACTTCACTTAATATAAAATGCAATTCTGTAATGTAAATTAGAAATATTATTACAATTAAAAAATGTTTTAAATTAATATAATTTAACAATACAATGCAGTCAATTCTGTTTTGGGTAACTAAAACTTTTTAGAGTGAAAAAACTGATTGCATTTCTGTACATCTAATATTATTGCATTCAGAATAATCTACAAATCTCTATTATTACAATGGAACTGGTGCAAGCAAATATTTGCTGATATAAGCATTATAACAATGTACTTTAACTGTTTTTTCAATAAATTAATGTAACTTTGTCAGTACTTTGAAAAAAGTCACGTATTATTTCTAAAATGTAATACTGTAATTTAAATGTGTAATATTATTACAAATTAATGTAATGTAATTAAACAATACAATGCAATTCAAAAACGGTACTTTAAAGCAGTGGTCCCCAACCTACCATCAGACGTTTTCTCAGAGGACGACAAGCTGATAGGACATTGCTGCAACTCTGATGCAAGTTTTATCCATGGAGGAAAGACGCACTGCAGTGTTTTTCTGAGATAATTAGTCTACCGAAATGTGTATATTCCATACAAAATATAAATCCCGTCAGTCAGTTTTTGTCACATGACTCGCAGTGCCATTGTGGGATTCTGAAGATGTGCATGCCTTCATTGGAAATTACTTGCGCGTGGAAAAGATGCGAAGAACTTTGCAAAGAAACTTAAAAAAATTATTTTAATAAGATTTTATAACAGGATGTTCAGGTGCCGATAATAAATAAAACAGAAATAATTAATGATTTCTTGTGCTGTCCACTGACCTGTGGTTGATCACCACTGCAAATATAATATTCATAACTACAATAAAAAATTATAGTATAAGACGAACATTAATTATTGCTGTCATTCATTATTACACATTTATTATAAACACCAAGCCTAAAGAAATTAATGTAAATTTGGATGTCTTAATTGCATGCTGGATGCTAATTACATTACATAAGGCATGGTGTGTTACAGATGACTGATTTGAAAGTGTTTTGGTATGTAATACTCATGATTTCTTTTCTCTCAG
Seq C2 exon
CCTGAAAAGCCAGAGGTGGTGAGAACAAAGAGGAAGTACGAGAAAAAGCCCAAACTCCTGCCTCTCTCCGCACCGTTGCATACTGGACCTTCCCTTTTTAACCCTAAAGACCTCAACCAGTACGACTTCCCCAGCTCTGATGACGAGCCTTTTTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101579:ENSDART00000158811:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACACAGTGCCAGACTTTG
R:
TGCGAAAAAGGCTCGTCATCA
Band lengths:
306-1662
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]