RnoINT0055457 @ rn6
Intron Retention
Gene
ENSRNOG00000014834 | Epc1
Description
enhancer of polycomb homolog 1 [Source:RGD Symbol;Acc:2324280]
Coordinates
chr17:57318146-57320156:-
Coord C1 exon
chr17:57319997-57320156
Coord A exon
chr17:57318320-57319996
Coord C2 exon
chr17:57318146-57318319
Length
1677 bp
Sequences
Splice sites
5' ss Seq
AAGGTTATT
5' ss Score
4.15
3' ss Seq
GACTCGTGTCTGTGTTGCAGCAA
3' ss Score
8.05
Exon sequences
Seq C1 exon
GTATAATTTAGGTGACTACAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACCTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGACGTCACGGATGCGAAGGAGTTCAAAGTTAACAAG
Seq A exon
GTTATTAGAGCTTTGTAACAGTAGATCCAGTAAACAGGGAAAACCATGAATTCCTACCGCAAGGGATTTCTGAACACTGAAAATAAGGGACACTAAAAATGGGGAGCTTTTCACGACAATTTAATTTCCCTTGCTTCCTTACAAGGGAAGGCTTTGCTCTCTGTCTGATAAAAAGAGGGGTTTGCTGAGAGGGGGTATGAAATGTTGGTGTGGTTAGTGGTATGGAGGCCTGGAGAGAGCATGAAGCCTTCCACCCAGTGTAACGTTCTGGGCCACATCTGTGTGTCAGTGTCAGGCGGGTCTTGTCAACGGCTGGTAACGTGGGCAGAAGTGGAAATACTTTGACAAGTTGATATGTCCTAATTTGTGAAGAGTAAAATTGGTGAGGGGGAAATAAAATTAGTAAGGAGAAAACCAGGGGAATAAGAGAGAGCCGGCAGTGTGCCTTTCTGATAAATGCACCTTAGCAGGGAAGGTTTTCATATACTTGTGACCTAACATGTATCATTTAACTCAGACTTAGCATTCCATTTCAATTGAGGAAATAATGTGATCTGCTAATCATTTATTATCTAACCTGTTCTGTTTAATATTTTGTGTCTGTGATTTTTTTTTTTTTTTATAATTTGGTGTATAATTTACCGTACCATTTGGAATGGTGGTTTCTGCAGCATAGACTTTTTCCCTATCAGAGCACTGACCAAGACTATTTCAAACATGTTGGTTTTGAAGTATTGAACTGTTGAACAGATAAATAGAAGTATTCTCTTTGGTAATCACAAATGGTGGCTATTAATCCCAGCAGAAGCTGTGCCTGGCAGATCTCTTGAGGTTGAGACACAGCCTGGTCTACATAGTGAGTTTCAGGCTAGCCAAGGCTACTCAGTGAAACACCTCTATCCAATTACCTCTGCCAAAAAAAAAAAAAAAAAAAAAAAAAATGCTAAAGGCCATGTTCCAAATACTTGTGTGCTCATAATTTCCAGTCCTGCATAGTACAGTTTTCCTTGTTTTTATATTGAAGTCTATTGTCCACCTGTCTGAAATATATGGCCTTACAAATCACTTCAAAGGTGTTACTTTGATTTTTATATTTTGGGATTTAACTCGGATTCTAATTGTACAACATTCATTGTTCGTCTGTATGTTCCAGAGACATGAGCCATGCATGTGGTTCTGGTTTACCTTAAATCCTTCTAAGTCAAGACAGAGTCATTAGTGGAATAGGCCTGCTGTTTTGAACATTTTCTTATTTAAATTTTCATTCAAACTGTTTTGTTGTCTGGCTGGAGAGCTGGGTGAGCAGTTAGGAGTGCCCATTGTTCCTGCAGAGGACCTGGGTGCAGTTGAGTTGCCAGCACCTACGTGAGATGGCATACAGTTCTGTAATTCCAGTTCCAGGGGGTCTGACAGTCTCTGGCTTTTGAAGACACCTGCACATACACATACACTTTTAAGTCTTTTAAGCAAATGTTTGTTTTGAACAGAGCAAATGTAGATTATTAGGGGAAACTGAGACTGACCCTCTGAGGGTAGGGGGGCCACCAGAGGGTTGCCTGAGCCTCTTTTAATAGTTCAAGCACTTGGCTCCCCAAGTAATAATTAACTCAAGCTGTTAAGAGGTTGCAGTTGTGGGGTGTGCTTTCGCTGTGTGACCGACTCGTGTCTGTGTTGCAG
Seq C2 exon
CAAGATAAGGCTGATCTTATTCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCGTCGTCTGCTGCCGCACCCCAGCAGCCAAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014834:ENSRNOT00000019968:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.810
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTGACTACAGTGGAGAGATCA
R:
CTGTGACAGAGGCTCTTCATCT
Band lengths:
326-2003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]