MmuINT0058038 @ mm10
Intron Retention
Gene
ENSMUSG00000024240 | Epc1
Description
enhancer of polycomb homolog 1 (Drosophila) [Source:MGI Symbol;Acc:MGI:1278322]
Coordinates
chr18:6450466-6452392:-
Coord C1 exon
chr18:6452233-6452392
Coord A exon
chr18:6450640-6452232
Coord C2 exon
chr18:6450466-6450639
Length
1593 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
CATTCATGCCTATGTTGCAGCAA
3' ss Score
6.47
Exon sequences
Seq C1 exon
GTATAATTTAGGTGACTATAGTGGAGAGATCATGTCTGAGGTCATGGCACAGAGACAGCCAGTGAAGCCTACTTATGCCATCCCCATCATCCCGATTACTAACAGCAGCCAGTTCAAACACCAGGATGCCACGGACTCGAAGGAGTTCAAAGTTAACAAG
Seq A exon
GTGATTAGAGCTCTGTAACAGTAGCATCCAGTAAACAGTGAAAAGAATAAATTGCACTGCAAGGTGTTCTGGAGTTAAGGGGGTTGGGGAGCTTTTCATGACAATTTAATTTCTACTTCTCTTGCTTCCTTACAAGGGAAGGCTTTGTTCTGTGTCTGATAAAAAGAGGGATTTGCTGAAAGGGGATAGGAAATGTTGGTGTGATGAATGGCGTGATTAGAGGCCTGGAAAGAATATGAAGCCCTCCCACCCGATGTAACATTCCGGGACACATCTATGTGTGAGTGACAGGCAGGTCTTGTTAACAGCTGGTGACATGGGCAGAAGTATAAATACTTTGACAAGTTGATACATCATAATTTGTGAAGAATAAAATTGGTGAGGGAGAATAAGAGAGGGCAGGCAGTATGCCCTTTTGATAAATGTGCCTCAGGAGAGAAGTGTTTGATGACCTAACATTTAACTCGGACTTACCATTCCATTTCAATTGAGGAAATCTGCTGATCATTTTGTTATCTAACCTGTTCTGTTTATTTTGTTTCTGTGATTTTTTTTTTTAATTTGGTGTATAATGTACCATATCATTTGGAATGATGGTTTCTGCAGCCTAGACTTTTTTCCTGTCAGAGCACTGACAGAGACTATTTCAGATACGTTGATTTTGAGGTATTGGGATGTTGGACAGATGAATGGAAGTAATCTCTTTGATAATCACAAATGGTGGCTGTTAATCACAGCAGAGGCCACGCCTGGCAGATCTCTGAGTTTGAGACACAGCCTGGTCTACATAGTGAGTTTCTTCAGCCAGGCAAGGCTACTTAGTGAAACGCCTCCACCCCACTACCCCTGTCAAAAACAAGTTAAAGATCACTCTCCAAAATATTTCTTTGCTCATAATTTCTAGTCCTACATATGTATAATTTTTCCTTGTTTTTATATTGAAGTCTTTGTCTACCTGTCTGAAATGTATGACTTTATATATCACTTAGTCTTACTTTGATTTTCATATTTCAGAACTTAACTCCAATTCTAATTATACAACATTGTATTCATCTGTGTGTTCTAGAAACATGAGCCATGCACTTGGATCTAGTTTACCTTAAATCCTTCTAAATTAAGACAGAATCATTAATGGAATAGTCCTGTTATTTTGAACATTTTCTTATTTAAATTTTCATTCAAATTTTTGTGTTGTCTGGCTGGAGAGATAGGTGAACAGTTAGCAACACATATTGTTCTTGCAGAGAACAATGTTCTTGCTGGGTTGAGTTGCCAGCACCTACGTCAGATGGCATACAACTGCCTACAAGTCTAGTTCCAGGGGATCTGATATTCTCTGCCTTTTGAAGGCACCTGTGCATACACATAAGTCTTGTAAGCAAATGTTTGTTTTGAACAGAGCAAATGTAGATTATTAGGGGAAACTGAGACTGAACCTCTGAGGGTAGGAGGGGCTACCAGGAGGAACACTCAAGCCTGTTTTAATAGTTTAAGCACTTGGCTCCCCAAGTAATAATTAACTCAAGTTGTTACAGAAGTTGCAGTTGTGGAATGTGCTACTGGGTGACTGTCTCATTCATGCCTATGTTGCAG
Seq C2 exon
CAAGATAAGGCTGATCTTATCCGGCCGAAGCGCAAATATGAAAAGAAGCCCAAAGTCTTACCCCCATCTGCTGCCGCCCCTCAGCAGCAGAGTCCTGCTGCACTGCCAGGCTTCAGTGCTAAAGACTTAAACCAGTACGACTTCCCCAGCTCAGATGAAGAGCCTCTGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024240:ENSMUST00000115870:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.574 A=NA C2=0.862
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGTGACTATAGTGGAGAGATCA
R:
CTGTGACAGAGGCTCTTCATCT
Band lengths:
326-1919
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types