DreINT0065406 @ danRer10
Intron Retention
Gene
ENSDARG00000028688 | exosc2
Description
exosome component 2 [Source:ZFIN;Acc:ZDB-GENE-050417-27]
Coordinates
chr5:71357224-71357643:+
Coord C1 exon
chr5:71357224-71357292
Coord A exon
chr5:71357293-71357466
Coord C2 exon
chr5:71357467-71357643
Length
174 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGTCTGGGTTGTTTTTCAGCTG
3' ss Score
7.98
Exon sequences
Seq C1 exon
GCGGAGGTTCAGTCGATCTTCTCGGACGGCGCTCTCTCTCTGCACACGCGCAGTCTGAAGTACGGCAAG
Seq A exon
GTGAGCGTGTAGAGCCTTATATACTGTGCTGAGTCCCCCAGATTTCTCTGTTACAGTAATCCTCTCTCCAGAGCGCTCTACTGTCCTCTCTCAGTGCAGACACCGTAGATCAGTCAGAACCAGTCAAACCCATCTAACAACACTGAAGAGCTGCTGGTCTGGGTTGTTTTTCAG
Seq C2 exon
CTGGGTCAGGGTGTGCTGGTGTATGTGTCTCCGTCGCTGGTGAAGAGGCAGAAGACACACTTCCACAATCTGCCCTGCGGAGCGTCGCTGATCCTGGGGAACAATGGATACGTGTGGCTGAGTCCCACACCGGCACTGCAGGAGGAGCAGGCCGGAGGATTCTACACCAGCATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028688:ENSDART00000149195:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGTTCAGTCGATCTTC
R:
CATGCTGGTGTAGAATCCTCCG
Band lengths:
243-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]