RnoINT0057247 @ rn6
Intron Retention
Gene
ENSRNOG00000009245 | Exosc2
Description
exosome component 2 [Source:RGD Symbol;Acc:1306573]
Coordinates
chr3:10154632-10156481:-
Coord C1 exon
chr3:10156413-10156481
Coord A exon
chr3:10154809-10156412
Coord C2 exon
chr3:10154632-10154808
Length
1604 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
CTGATGGTCTGTCTCTTTAGCTA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GCGGAAGTCCAGGCTGTGTTCTCCGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAGTACGGAAAG
Seq A exon
GTAAGTTGGGCTTTGAGGCTTCAAGTTCAGTCTGAATCCTGTGGCTCCCTGGCATGCTGGCCTAATGACCTGGTATTAGCTGGGTGTGGTGCCATGGGCCTGTAATCCCAGCGCCCTGGAGGCTCAAGTAGGTGAATTAAAACTGGAAGCCAGTGTGGATTACACAGAGAGACTACCTTCCTGCACAACACAGAACCCAGTTATTTAGGACTAGTGGCCTGCTGGGCTAGGAGACTTGTGCTGCCAGTAGAAGGGCAGGGTGATTGGTATCCTAAATTCCTCTCCTTCTGAGGAGCCTGTTCTGGCAGAGCCCCACTGCTGCTTGGGGCTCTGAGACTGTTCTTTCTGGGAGATGCTCAGCCCAGCATTGAGAGACTGGATACATGTCCGAAGAAACCACGTCTATAGTGCAGTCAACATAGGGCCAGCGAGATGGATTTCCCATCTGAGCCTCTAGATGAATTTTGCCTGCTTCCGTGAGGTTCCATTATTGAGGTTTATTTTAAAGATAGCTTGCTTCCGAGGACACATTTGTTTCTTGACTCATCGTTTTCTGAGAAGAATAGAAAAGCAGTGTCCTTTAATGAAGTGGCAGCTGTCACCATGTTCCTGAACATGTTCCTAAACATGTATGTACTTGACGTAGGTAGGAGGTGGTGTGTGTGCTGACCTTCAGCCTGGTGCTGTAGACACTTTCTTATTGTATGTGGACTTAAACTGACCTGTCAAGACCTGGCAGGGTTTTGCCAATCCAGTGGACCACATTTTGTGGGTGGCATGGGAAATTGAAGTTAAGATCTACACTAGAGTCATGGAGTGAAACTGCTATATGGCCAATGGGAAACTCCTCATCGCCTCTAGTTTCTGTAACGGCCAGCACACCTACCTGCTCTGGATAGAAGGCAAAGGGAAGTGAGGAGTATTGACAGCTGCCTTTTAATTAAAAGAAGCTGCCTGGCAATGGTGGTACAGGCCTTTAATCCCAGTGCTCAGGAGGCGGAGGCAGGAGGATTTCTGAGTTCAGCCAGCCTGGTCTACAGAGTGAGTTCTAGGACAGTCAGGGCTACACAGAGAAACCCTGCCTTGGAAAACAATAGATAGATGACAGACAGACAGACATGTGCCAGAGGACATCTTGCAGGAGGTGGCCATCCCTCACCATGTGAGTTCTGGGTATGAACTCGGCTTGGCAGGCTTGGCAGCATGCGCCTTTACCACCATCTTACTAACCTGATTGCCTCCTTCCCTGGGATGAGTAAATAGCTATGGGCCAGAAATGTTTTCTGCAAAGTGCATGCCGTCCGTGCACTGGGTGACTGCAGCGCCCATAGGAAGGACAGTGGTGGGGCACGCCAGGTTGTGTATTATGGAGCCTGTTTGCATTCATCTCACTGTTTCTTGCTAGCTCAGCCGGCTGGGTATTACTGAGTCTCTTGCCCCAGCCTCTCAGAAGCTGTGCTCCCCCTACCTGGTTCCTGATCCGTTTCTTTTGTTGTTGTTTTGGGACGGGGTTTCATGTAGCCCAGGCTGGCCTTAACCTCCCAAGTGCTGGAGTTATATGCATGAGTCACTCTGCCTGCCTGTCTGATGGTCTGTCTCTTTAG
Seq C2 exon
CTAGGTCAGGGGGCTTTAGTCCAGGTCTCTCCTGCCCTGGTGAAAAGACAGAAGACCCATTTCCATGACTTGCCATGCGGTGCCTCAGTGATTCTGGGTAACAATGGTTTCATCTGGATCTACCCGACACCCGAGCACAAGGACGAGGAGGCAGGGGGCTTCATTGCCAACCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009245:ENSRNOT00000012312:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGTCCAGGCTGTG
R:
CTCCAGGTTGGCAATGAAGC
Band lengths:
246-1850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]