MmuINT0059852 @ mm10
Intron Retention
Gene
ENSMUSG00000039356 | Exosc2
Description
exosome component 2 [Source:MGI Symbol;Acc:MGI:2385133]
Coordinates
chr2:31676668-31678627:+
Coord C1 exon
chr2:31676668-31676736
Coord A exon
chr2:31676737-31678450
Coord C2 exon
chr2:31678451-31678627
Length
1714 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CTCATGGTCTGTCTCTTTAGCTA
3' ss Score
7.41
Exon sequences
Seq C1 exon
GCGGAGGTCCAGGCTGTGTTCTCGGATGGAGCTGTTTCTCTGCACACGAGGAGCCTGAAATATGGGAAG
Seq A exon
GTAAGACAGGCTATGAGGCTTTAAGTTCAGTTCTGAATCCGAGTAGCTCCCTGCATGCTGACCTAAAGACCTGGTAGTTAGCTGGGTGTGGGGTCATGAGCCTATAATCTCAGCTCCCTGGAGGCAGAAGGAGGTGATTAAAACTGGAAGCCAGCATGGTTATATAGAGAGACTGCCTCTTCCTGCATGACCCCCTGCCCCCAACCTCCAATCTAAGAACAAAAAGCAACAACACAGAACCCAGTTATTTTGGACTAGTGACCTACCAGGATAGGGGACGTCTCCCGCCGGTGGCCGGGCAGAGTGGTTGGCATCCTAAATCCATTTCCTCCTAAGGAACCTGTTCTGGTAGAGCCCCTCTGCTTGGGGCTGTGAGGCTGTGAGGCTGTTCTTTCTGGGAATGCTCAGCCCAGCATTGTGAGGCTGGCCGCATGTCCACAGAACCATGTCTACAGGGCCATCATAGTGCTGCCAGAGACAGATTTCCCATCTGAGTCTCTGATTTTTGCCTGTTTCTGTGAGGCTCCATTAATGGGGTTTATTTTAGATAGCATACTTTCTCGGACACATCAGGGCATCTTTGTTTCCCATCTCATCGTTTTCTGAGAAGAATAAAAAAGCAGTGTCCTTTAATGAAGTGGCAGCTGTCACCATGTTCCTGACCATGTACTTGAAGTAGGAGGAGGTATGGGTGCTGACCTCCATCCAGCCTGGTGTTGTAGACACTTTCTTATTGTATGTGCACTTAGAACTGACCTGTCAAGACCTGGCATGGTTTTGCCAATCCCCTGGACCACATCTTGTGGGTGGCATGGGAATTTGAGGTTAAGATGGAAACTAGAGTCATGGAATGGATCTGCTATGTGGCCAGTGGGAGACTCCTCGTTGGCTCTAGTTTCTGTAATGGCCAGCATGCCTCCTCTGGATTAGAAGGCAGACGGAAGTGATGGAGTATTGACAGCTACCTTCTTTTAATTAAAATGAGCTGCCTGGCAGTGGTGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCTAGGATGGTCAGGACTACATAGAGAAACCCTGCCTTGAAAAAACGATTGGTAGGTAGGTAGGTAGGTAGGTAGGTGCGTGCGTGCCCCATATGCGCACTTGTGGAGGTCAGAGGACATCTTGTAGGAGTTGTTATCTCTTACTGTCTGGGTGCTGGGAATTGAACTCAGCTGTCAGACTTGATAGCCTTTACCACCATCTTGCCAACCTGCCTGCCTCCTCCTCTGGGATGTGTAAGTAGCTATGGGCCAGAACTGTTTTCTGCAAAGTGCACGCTGTCTGTGCACTGGGCAACTGCAGTGTCCCAGGAAGGACAGTGGTGGGGCACGCCGGGTTGTATATTCTGAAGCCTGGTTGTATTCATCTAGCTGATTGTTTCTTGCTCTTTTTTTTTTTTTTTTTCCTGCAGGGTGGGTGGGTGGGGTCTTACTAGATAGCTCAGCTGGCCGAGTATTAGCGAGCTTCTTGCCCCAGCCTCTCAGAGGCTGTGCTCCTCCTACCTGGCTTCTGATCCATTTCCTTTTTGCGTGTTGTTTTGAGTCAGGGTTTCATGTAGCCCAGGCTGGCCTTGTAAGTGCTGGAGTTACAGGCACGTGCTACTCCGCCTGTCTCATGGTCTGTCTCTTTAG
Seq C2 exon
CTAGGTCAGGGAGTTTTAGTCCAGGTCTCGCCTTCCCTGGTGAAAAGACAGAAGACTCATTTCCATGACTTGCCATGTGGTGCCTCAGTGATTCTGGGTAACAACGGTTTCATCTGGATCTACCCAACACCTGAGCACAAGGATGAGGATGCTGGGGGCTTCATTGCTAACTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039356:ENSMUST00000038474:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGGTCCAGGCTGTG
R:
CTCCAAGTTAGCAATGAAGCCC
Band lengths:
246-1960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types