DreINT0066281 @ danRer10
Intron Retention
Gene
ENSDARG00000100292 | fam166b
Description
family with sequence similarity 166, member B [Source:ZFIN;Acc:ZDB-GENE-070209-41]
Coordinates
chr10:17122847-17125216:-
Coord C1 exon
chr10:17125098-17125216
Coord A exon
chr10:17123071-17125097
Coord C2 exon
chr10:17122847-17123070
Length
2027 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CTGCTACTGGTTGTGTTTAGGTA
3' ss Score
8.5
Exon sequences
Seq C1 exon
CTCACTAGCAACCGTTTCACAACATTCAAAACGGTCTGCGGCCACTTTTAAAATATGGATCTGTTTCCTCCTAAATTTAGCAAAGTGCTGGTGACACCAGACCCGCAGTACATCCCAGG
Seq A exon
GTGAGTTTAGAAGTATTTCCATAAACTGTTATTCATTCATTTATTTCTTATTTTGTTCCAATAATTGTAACGTTACTGAACTTAAAACATCAGTCTAATGAAGCATTTCTACTTCCAGTTGTCTGTGGAGGAATTGAATATAACCTGTCTGCCTGTCTGTCCAAAGTATATGTACCAACTTTAATCCACAAGATTCAAAGAATTAAACCACATTCATTTTATGGAAAGATGTTTGTTTTATTAATTTATTCTGGACTTAAAATCCTGAAAACCACAGTAGTGTGTTATTTTCTAATTCAATGTACCTGAGTTAATTATTCTGCTTATACAATTGTTACCACAAAAAAAGAGAATGTGCTGAAGTTGTATCTCAACACATTTGACAAGTTTGTGTCCTCAAACTGCTCTTGTGTGTGGGATAAGTCTCTTATGAATGCCCAATGCTTTTTGTTTTGTTTTGATTTGAATTTTGACTGTTGTAGGTTGTGAAATGACAATATGGAGCTGTAATGTGTAATATTCAGTGATAGACTGCAATATATAAGAGTGTTCTTTTCTTTTAAATTAACAGTTAATTTTATTAATCAGCAACAATTTTATTTAATTAAAAGGAACGATAAAGTGATTTATAGTGTGTTACAAAATATTTTGTATACTGTCCATCAAAGAATGCTAAAAAAATAAATATTTAACATATTGCACAAAAATATAAACAGGAAAAAAATATTTTAACATTAATAATAACATGAACATAAACAATAGTAATTGATTTTAGCAGCAAGTGGGGTATATGCACACAGACTTTTAATTTCAGCCAGCCACCCTCAGTGCTTCCTGTGAACTGTCTTTCCATTATAAAATTGCCACGTTTAAGGTCTGAATTCTTTAAAAATCAGTGATCTTCACTGCCTAATAGATATAAGATATAAAGTGTGTCTCAGACCAGACAAGAAGCACTGCATTAAATTCCATTTACCCCGCCAAGTCTTTAAAACAAGACAGTTTATTTAACCCCAGTATTTTCAATGGAGTTTCTGCTCTCATCTACTGATCCTGACAGCGCTAGCGGTTACAACATCTTTCATCTCGTTTTACACTTGAACATCTAAATTAATGCTTAAGTCTATTTAACTGAATGTATTGTACTTACATTACAACATCAATGCTGTAAAAGGAACCTTATGAAATTAAAAACAGTAACATTAAGGTTTCACTGGAAGTTTATCAAAGGCTAAAAAACACTAGCTGTGCATATAACCCATTAGAAAGGTTTTTGATGGATCATGTGGACATGAAGACTGCAGGACTGACATTTATTTTTGTGTGAAAAGCATACTTACAGGGATACATCACACTTTACAATGTGTCATTTACTTTGTTTTTAGTTTGAAAAGTTGAAAATATCAATCTGAAGAAATTCATGCACCGGGATCATTTGGGTTACTGTCATGTTCCCTTTGCATGGTTTATAAAGAGGAAACATGGGGTTATTGTGCACTGGCATTCTGTGGATTTAAAATATGTTTGGAAGAACATTTATCTAAAGATGAAAGTCATATACACCATGGAATAATTGTGAGATGTCTCATATTAAAGTGTCTAATATTAAGGTAATATCACTTTATCGTCAAGTTTTTGTAATGTTGTCAAATAATGCATAAAGTATAATATATAATTGTATAAATTAAAGGGATGGTTCTCTCAAAATTCAAAATATACTAACTATTTACCCTCAAGTGTTTCTAAACCTCAATGAGTTTCTTTTTTACTTTTAACATAAAATATGTTAGATCAAAAGATGTTTAGATAAAAACAACTGTTAGAAACCGGTAACCATTGACTCTTACTTTAGTAAGAGTAAAAAAAATTCTATTACATGTTTTCAACTTTCTTCTTTTGTGTTTAACTAAAAAAGAAAATGGGTTTGTGGGTAGTTTTGGGTGAACTGTCAGAAAATTTGAGTGCATATATGCTTAGTTGACATTGACAAATCACTATTCAAAGCTTCTGCTACTGGTTGTGTTTAG
Seq C2 exon
GTATGCAGGCTACTGTCCTCAGCTGAAGTATCATGTGGGCCAGACTTATGGTCAGTTGACAGCAAAGCTCCTAACTTCCCCGGAGGTATCCCACTCACAGAGGCTTGTGCTCCAAACCAGTCCTCTCTCATCCACAGAGAAGGAAACAGCATCCCGCAGTCAGATCTGGTGGAGCAGACATGGGGCAAGCAGGAACCTGGAAACTATGATCCCGGGTTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100292:ENSDART00000170083:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.132
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.0=27.3)
A:
NA
C2:
PF106294=DUF2475=PD(89.6=78.9),PF106294=DUF2475=PU(11.4=10.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]