HsaINT0060206 @ hg19
Intron Retention
Gene
ENSG00000215187 | FAM166B
Description
family with sequence similarity 166, member B [Source:HGNC Symbol;Acc:34242]
Coordinates
chr9:35563163-35563896:-
Coord C1 exon
chr9:35563764-35563896
Coord A exon
chr9:35563387-35563763
Coord C2 exon
chr9:35563163-35563386
Length
377 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
3' ss Seq
TGGGAGAGTCTGTGCTGCAGGTA
3' ss Score
1.75
Exon sequences
Seq C1 exon
AGCCCTGGACACGGTACACACAGACCAGAGCCTTGGCTCAAAGGCAAACAAAAGGAAATGCCCGGCTCCCCATGGCTGTGGCCAGCACCTTCATACCAGGGCTCAACCCTCAGAACCCTCATTATATCCCAGG
Seq A exon
GTAAGACTCCCACTTAGCGCTCCCCGCTTGCTGCTGGGAGTAGGGGTATAGGGTGGAGGAATTAAGCTGCTTAGAGCATGGGGCCAAGCGGACAGGTTGGTTTGGGAGGCTGAGGTCTCTATGGTGGTGGATGGAAAAGGAGAAGCAAGGGACTAGTGAGACACCGGGTCTGCCCCAAAGCTTTGTGTTGTTCTCTCCATGGGAACAGGGTAACAGCAGAGGAAGGATCGAAAGCCCAGGCAGAGAACTTAGAAATGCCTGCTCCAAATATATACACTGCTGAGTCCAGAAAGATCAGGGCTTCAGAGGTCTCCGCTTCTGCCTCTGGGGATGGCGGGGCAGGGCGATTCTGGTGAGTGGGAGAGTCTGTGCTGCAG
Seq C2 exon
GTACACTGGACACTGCCCACTACTTCGGTTCAGCGTGGGCCAGACCTATGGGCAGGTGACTGGTCAGCTACTTCGAGGCCCTCCTGGCCTAGCCTGGCCCCCTGTCCACCGCACACTTCTGCCTCCCATTCGGCCTCCAAGATCTCCTGAGGTTCCCAGGGAGAGTCTACCTGTCAGGCGTGGGCAAGAAAGGCTCAGCTCCAGCATGATCCCTGGGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215187-FAM166B:NM_001099951:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.474
Domain overlap (PFAM):
C1:
PF106294=DUF2475=PU(9.4=28.6)
A:
NA
C2:
PF106294=DUF2475=PD(89.1=75.0),PF106294=DUF2475=PU(12.9=11.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGTACACACAGACCAGA
R:
TACCCAGGGATCATGCTGGAG
Band lengths:
344-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)