DreINT0067440 @ danRer10
Intron Retention
Gene
ENSDARG00000051896 | fbn2a
Description
fibrillin 2a [Source:ZFIN;Acc:ZDB-GENE-090112-4]
Coordinates
chr10:16441290-16441740:-
Coord C1 exon
chr10:16441615-16441740
Coord A exon
chr10:16441416-16441614
Coord C2 exon
chr10:16441290-16441415
Length
199 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
ATATTACTGTTTGTCTGCAGACG
3' ss Score
9.53
Exon sequences
Seq C1 exon
ATATTGATGAATGTGAGCGTAACCTTTCACTGTGCAATGGAGGCACCTGTGAAAACACTGACGGCAGCTACAAGTGTGTGTGTCCGCCTGGTCATCATCTGTCTGTGGATGGCAGTGCCTGTGAAG
Seq A exon
GTGAACTAAATCATGTCATTTGTGTGGGCTATATCTCACTCTTGTTTGTCAAAATAAGCGCATTGTGCCAAATGAATCATTTCAATGTAAGTACATATTAGTTAAGGACACTTAATGTAAAGTGGAACTGTTTTAACCCAAAATAGATTTTGACCTAATTCTTGTCATTGATCTGACGGATATTACTGTTTGTCTGCAG
Seq C2 exon
ACGTGAACGAGTGTGATCTGAGTAGCACACTTTGTCCTAATGGCTGGTGTGTGAATTTGGTGGGAACCTACCAGTGCTCTTGTAACTCTGGCTACCAGACGACACCTGATTGGAAGGGTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051896:ENSDART00000149104:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
A:
NA
C2:
PF0764510=EGF_CA=WD(100=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGTGAGCGTAACCTTTCACTGT
R:
TGTGCAACCCTTCCAATCAGG
Band lengths:
242-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]