DreINT0068490 @ danRer10
Intron Retention
Gene
ENSDARG00000051768 | fhod1
Description
formin homology 2 domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-110623-4]
Coordinates
chr7:34338522-34339037:+
Coord C1 exon
chr7:34338522-34338712
Coord A exon
chr7:34338713-34338844
Coord C2 exon
chr7:34338845-34339037
Length
132 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
CTGCTTCTCCCACTTTGCAGGTT
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTGGAGTTTGAGCAATTATCTGAAAACCTGATTCAGTTGGAAAGAAAATGCAAAACGTCCTGGGACAACCTTAAAGTTGTGGCCAAGCATGAAACTAAACCCAACTTAAAAAACAAAATGACTGAATTCCTGAAAGACTGTACTGAAAGAATCATCATCCTGAAAGTAGTGCACAGACGCATTATTAACAG
Seq A exon
GTAAAACGCATGATGAACTATGGTAAAATGAATGTAAATTACCTAAGCTGATATGCATGAATGCTCTTTGGTCAATGCTTTAATTAGACTGAACTGGAACATATAATAATTTCTGCTTCTCCCACTTTGCAG
Seq C2 exon
GTTTCATTCTTTCCTGTTGTACTTGGGTCATCCTTCATACTCGGTGCGGGACACTAAAGTGACTCATTTCTGTAAGATCATCAGTGAGTTTGCCCTGGAGTATCGCACCACTCGTGAGAGAGTCCTCACTCAGAAACGCAAGCGTGCCGTCCACCGAGAGCGCACCAAAACCCGGGGCAAGCTAATCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051768:ENSDART00000073447:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.329
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(17.1=100)
A:
NA
C2:
PF0218118=FH2=PD(9.5=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAAAACGTCCTGGGACAA
R:
GCGATACTCCAGGGCAAACTC
Band lengths:
250-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]