MmuINT0064472 @ mm9
Intron Retention
Gene
ENSMUSG00000014778 | Fhod1
Description
formin homology 2 domain containing 1 [Source:MGI Symbol;Acc:MGI:2679008]
Coordinates
chr8:107853995-107854477:-
Coord C1 exon
chr8:107854287-107854477
Coord A exon
chr8:107854188-107854286
Coord C2 exon
chr8:107853995-107854187
Length
99 bp
Sequences
Splice sites
5' ss Seq
TAGGTGGGG
5' ss Score
3.33
3' ss Seq
ACTCCTTCCAACCTGCCTAGGTT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTGGACTTTGAACAGCTGACTGAGAACCTAGGGCAGCTGGAGTGCCGGAGCCAGGCTGCCGAGGACAGCCTCCGGAGCTTGGCTAAGCACGAGCTCTCCCCAGCTCTGCGTGCTCGCCTCACCCACTTCTTGGCCCAGTGTACCCGCCGGGTAGCCATGTTAAGAGTAGTGCATCGCCGAGTCTGCAATAG
Seq A exon
GTGGGGCCAGGAGCCAGAGGGAGGTAGGACTGCCACCACCATCCCTTAAACACCAGGAAGACTCATGATCCAGTCTCCCACTCCTTCCAACCTGCCTAG
Seq C2 exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCACAGGCAGCAAGGGATGTACGCATCATGCAGTTCTGCCACACACTGAGAGAGTTTGCCCTTGAGTATCGGACTTGTCGGGAACGGGTACTGCAGCAGCAGCAGAAGCGGGCTACATACCGTGAGCGCAACAAGACCCGTGGTCGCATGATTACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014778-Fhod1:NM_177699:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.9=100)
A:
NA
C2:
PF0218118=FH2=PD(9.4=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCGCCGAGTCTGCAATAG
R:
GTATGTAGCCCGCTTCTGCTG
Band lengths:
175-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: