HsaINT0064155 @ hg38
Intron Retention
Gene
ENSG00000135723 | FHOD1
Description
formin homology 2 domain containing 1 [Source:HGNC Symbol;Acc:HGNC:17905]
Coordinates
chr16:67230314-67230791:-
Coord C1 exon
chr16:67230601-67230791
Coord A exon
chr16:67230507-67230600
Coord C2 exon
chr16:67230314-67230506
Length
94 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGG
5' ss Score
6.53
3' ss Seq
CCCTACTCTGACCTGCCTAGGTT
3' ss Score
7.16
Exon sequences
Seq C1 exon
GTGGACTTTGAACAGCTGACTGAGAACCTGGGGCAGCTGGAGCGCCGGAGCCGGGCAGCCGAGGAGAGCCTGCGGAGCTTGGCCAAGCATGAGCTGGCCCCAGCCCTGCGTGCCCGCCTCACCCACTTCCTGGACCAGTGTGCCCGCCGTGTTGCCATGCTAAGGATAGTGCACCGCCGTGTCTGCAATAG
Seq A exon
GTAGGGGCATGGACCCAAGAGAGGCAGGACGGCCACCACCCTCCCTCAGACAATAAGCAGGACTTACTGTCCCTCCCTACTCTGACCTGCCTAG
Seq C2 exon
GTTCCATGCCTTCCTGCTCTACCTGGGCTACACCCCGCAGGCGGCCCGTGAAGTGCGCATCATGCAGTTCTGCCACACGCTGCGGGAATTTGCGCTTGAGTATCGGACTTGCCGGGAACGAGTGCTACAGCAGCAGCAGAAGCAGGCCACATACCGTGAGCGCAACAAGACCCGGGGACGCATGATCACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135723:ENST00000258201:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(16.9=100)
A:
NA
C2:
PF0218118=FH2=PD(9.4=53.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTAAGGATAGTGCACCGC
R:
CTGCTTCTGCTGCTGCTGTAG
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development