DreINT0070783 @ danRer10
Intron Retention
Gene
ENSDARG00000013721 | g6pca.2
Description
glucose-6-phosphatase a, catalytic subunit, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-050309-17]
Coordinates
chr12:6008338-6010896:+
Coord C1 exon
chr12:6008338-6008447
Coord A exon
chr12:6008448-6010787
Coord C2 exon
chr12:6010788-6010896
Length
2340 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
TGATCTTCTTCTTGATACAGGTA
3' ss Score
9.04
Exon sequences
Seq C1 exon
GATCCTTTTTGGAGAACGTCCATACTGGTGGGTCCATGAGACGTCCTACTACATGAACAGCTCAGCGCCTCATATTGAACAGTATCCCATGACCTGTGAGACTGGCCCAG
Seq A exon
GTGCGTCTTTTTCTTAACCTGTATAAAATGATAATAATAATAATAGTAATAATAATACTAGTAATACTATTACTAATATTAGTAATAATAATAGTAATAATAATACATAGTTGGTTAATGGAAGGTTCCTTTATTATATATGGTAGACAACTGTCTAATTAGACTTAAAGGTCAGTAAAGTACTCTTAAACAGAGATGCACTGATATATCAGACAATACACAGTCTATAAAAGCAAACAGCATTAGACATTATGATTTTTTTAAGAACTATAATCAATGCTTGTATCCTTTGGATGCTTAAATTGTGACTTTTAATCGCACAATTCTAGTTTTCTTTCTTAATTGTTAGTCTTTGATTTAAAATTGTGTTTTCGTAACTCACAATTCTGACAAATAAAACATTTAAACAGAGATAAACTGATGTATCAGACAATACACAGTCCATAAAATAACCTGTAAAAATGATGTGTAAGACATCATGGAGGGTTAATGGAGGGTTCCTTTATTATATATGGTAGACAACTGTGTAATTAGACGTAAAGGTCAGTAAAATACTCTTAAACAGAGATGCACTGATAAATCAGACAATACACAATCCATAAAAGCAAACAGGATTAGAAATCATGATTTTCAAAATACTATAATCAAGGTTTGTATCCTGTGGAAGCTTGTAAATTGTAACTTTTAATCTCACAATTCTAGTTTTCTTTCTTAATTGTCAGTCTTTGACTTAAAATACTGTTTTCATTACTCACATTTCTGACAAATAAAACAGAGATGCACTGATGTATTGGACAATACTCAGTCCATAAAATAAATCAGCTATGAACATGGTATACTATACTCAAGGCTTGTATCCTGTGGAAGCATGTAAGTTGTAACTTTTTATTTAAAAATTGTGAGTCTTCAACTTAACATTCTGTCTTCATAACCCACAATTCTGACAAATAAAACATTAGTACTATATCCTCAGAACTGAGATATAAAGTCAGAAATTGAAAGTGAAAGATACTTTTGAAACAGCAAGATTTAAACTTTGTTTTGCAAGAGATAATCACTTAATTGCAAGGTATAAACTCATTTAACTATCAGATGCAAGTTCAGAACTTTAATAAATAGGCCATAATTAGTAATTATTTCAAGGCATAAACTCTTGTGAACTATAAGAAAAAAAAATAATTAAAAAAAAAAAAAAAAAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTTTTTGTAGTAGCCTAATTGTAATGTTTTTGAATTATACTATAGTAAGTAATGAATCTGTTGTGGCAATGCTATAGTTGCTGTGAAGATACATCAACTATATATTAACTACAGTATTTTTATCACAGTTTTTCAGTTCACTATAGTTATACTGTATAACTATAATAGTAAATACTATCATATAGGCAGCTTATAAACGTTACTAGTATGGTATACTGTAATACTTACTTAAATTAATATATTATCCATGTAGGGAGGAGAAGGTTGCTTTTTATTCCATGGCAGCCAGGCAAACAGAAAATTGAACGAACAAAATGCATTAATAAGTAAGCATTACCATCATGGCGAAATTAAAACAATGCTCTTAAATGCACGTAACAGTACACTTGTCGCCTCAGTTCAAACTCTTCTAAGTTTTACCGCGAAATAATTATAAATGGATGTCTAAAGGTAGGTCAAAAGTACTACTATTAAATATACGTTACCATTTTAGTTGCCACCAAAAAGGCTCAGCATTGGTAAACAATGAATGAATGTCGATTTCATTCACCCTGAAAACGTACCGCGCCATTTGAATACGTTTTACCTCAGTCTGCAATACAAGAACACTCACTGACAAGAGCTGTCATTTCAAAACATTTTGATTTTACATTTCATGACCCCATTAAACCGGGAAAGGTCCTCAAACAAAACAAGTCAGCTTATAGGCCTATAAGTCGACAAAAATGTAAACTAATATTCACAGAAATCTTCGTGATGGATTTAACTTACACAAGGTTAAAATGTTTCAAATTGTTTCCTTCATTAGTTTCGGTTTTATATCGATTCTTATGTTGTTAAATGAACGTATATTGTATTATCTTTGTATAACTATGATGTACTTTTAAATTTGTGTTTATGACACCAATAATTTGACTATTTTGCTTAACTTTAACGTGGTTTTCCCTTTGCTTACTGTGTGGCAATTAGCATATAAGAAATTAGCATCTTCAAAGCTATTTCATCTTATAGCAAAAATCCCTCACTCAACTTGATCTTCTTCTTGATACAG
Seq C2 exon
GTAGCCCATCAGGTCATGCTATGGGTGCTGCTGGTGTTTACTACACACTGGTCACCTCCATCCTCGCCATAATGCTTAGCAAAGGGAAGAAATCAACATCCAATAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013721:ENSDART00000091868:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.2=100)
A:
NA
C2:
PF0156916=PAP2=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]