MmuINT0066809 @ mm9
Intron Retention
Gene
ENSMUSG00000078650 | G6pc
Description
glucose-6-phosphatase, catalytic [Source:MGI Symbol;Acc:MGI:95607]
Coordinates
chr11:101232020-101234121:+
Coord C1 exon
chr11:101232020-101232129
Coord A exon
chr11:101232130-101234015
Coord C2 exon
chr11:101234016-101234121
Length
1886 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
ATCTCTTTTCTTCCATGTAGGAA
3' ss Score
11.06
Exon sequences
Seq C1 exon
GATTCTGTTTGGACAACGCCCGTATTGGTGGGTCCTGGACACCGACTACTACAGCAACAGCTCCGTGCCTATAATAAAGCAGTTCCCTGTCACCTGTGAGACCGGACCAG
Seq A exon
GTGAGAGTCCCAACCCTCACTGAGGTGGGGCAGACGTTGTTCTTCATAGACTGGCACTAACGTCATGTGTGTGGGTCTGCACTGACCTTGGGGGTGGGGGGTAGGGTGGGGTTTCAGGACAGCCATTGGTTTGTTCTATTGTCACAGTCAATTTGTCTTTCATGTAGCACAAATTCACCTTAAATCATGGCACCAGGGCTTTGCATTGCTAGTTTGGAAATCTAAATGATGCTCCCAGGATTAAAGTTACTACTCCAAAAGAGGCAATGGTACACCCACGGGCAATGGCTAGTTAGAGTAACTGAGCCAGAGCACTGTATCCAGAGAGGAGACAGTGGTCGACAGAAGCCTGAGGCCTTGAGTGTCCTTCCTAGCAGCCTGATCCAGATCGTTCCATACCTAATGCTACCTGCAGTTTTTGTCTTATTTAGGGGAGGTGGTTTCTTTGTTTTGAGGGATGTCCTCATATAGTCCAGACTGGTCCTAAATTCACTATGTAATTGAAGATGACCTTGAACTTCTGATCCTCCTTCCTCCATAACAAATCAGTAAAGCAATATATTAGAAGATCGCCAGGATCTACTTGGCATCTCACAGCTGCCTGTAACTCTAGTTTCAGGGGATCCAATTCTTCTGTGAATACTGCATGTTTGTGGTGAACAGACATACATGTAGGAAAGGCACGCATACACATGATTTTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTGTTTCTGAGACAGGGTTTCTCTGTATAGCCCTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGTCTCTGCCTCCCAAGTGCTGGGACTAAAGGCGTGTGCTACCACTGCCCGGCCCACATGATTATTTTTTAAATAGGAGAGAGAGAAAGAGAGAGAAAAAGAGAGAATATATTTGTCTACAAGACCTTCTGAATGTTGTATGGAGTGTAGATGAGAGAGCGGTTGATACCCACCAGAACCACAATTGTTTGGGGAAGGGATGTGCTAATGGGCTGATGAAGGCCAGTTGAGGCTAAACCTCACATGACCCCCACAAAGAACGCCCAACTAGAGATTTCTCTTCAAAAATTGTTCTGAACAGGTTGAGGGCACCAGCCTTTATGGCATGATACAGACTAGTCATGGGAAACAGGCTATACTTAGGTATAGGGTATACCATTGACCAAGATAGCTGTCTTCAGCCCAAAGACATGCCCATAAAAGGCTAAGAGTTAAGGAGCACCCACAACTACACTCTTACCAGCTGGAAAACTATCACTCCATCCAGGATGGGGTGTGGATAGCAGGTCAGGAGTGAGAAGCAACTTAAATTGGTTGGAGTGGGTCTTATTGAAAAAGTGAGTCTGAGACAAGATTTGAAGAAGCCAGGGAGTTGACCAGAGGAACTTTGGGAGAAAAGCATCCGTGATTCATTTAGGGGCAGGCAATGAGACAGTGTGGCTAGAGAAGAGAGAGAAGGAAAATATAGGGGAGCTGAGGGTGGACGGATCGGTGTGTAACTTACACCCTCACTGTCCGGATTCCTGTGCAATCTGCAAACTGTCTGCAACCTCAAGAGCAATGGAGGACCTCTCTGGTCTGAGCACAGTCCTCCCACACCCCTGCACAATGCTTGGCACACGGTGTGAATTCCATTTGTTAAATAAGTGAATTACAGTAAAGGAGTGGATAGTGAGATGGGTGGATAGCTAGTTAGACGGAAGGCATGATGACTGGATGGGCTTGATGGATGGATGGGGAGACGTGTGGCTGATGCCTTGACAGTCTCTCAGATTAACGTCTTTCCATCGTAAGTCCATTCATCTCTTTTCTTCCATGTAG
Seq C2 exon
GAAGTCCCTCTGGCCATGCCATGGGCGCAGCAGGTGTATACTATGTTATGGTCACTTCTACTCTTGCTATCTTTCGAGGAAAGAAAAAGCCAACGTATGGATTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078650-G6pc:NM_008061:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.5=100)
A:
NA
C2:
PF0156916=PAP2=FE(24.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTGTTTGGACAACGCCCG
R:
CGGAATCCATACGTTGGCTTT
Band lengths:
215-2101
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: