HsaINT0066916 @ hg38
Intron Retention
Gene
ENSG00000131482 | G6PC
Description
glucose-6-phosphatase catalytic subunit [Source:HGNC Symbol;Acc:HGNC:4056]
Coordinates
chr17:42903931-42907628:+
Coord C1 exon
chr17:42903931-42904040
Coord A exon
chr17:42904041-42907522
Coord C2 exon
chr17:42907523-42907628
Length
3482 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCTCTTTCCTGCCCTTTAGGGA
3' ss Score
11.63
Exon sequences
Seq C1 exon
GATTCTCTTTGGACAGCGTCCATACTGGTGGGTTTTGGATACTGACTACTACAGCAACACTTCCGTGCCCCTGATAAAGCAGTTCCCTGTAACCTGTGAGACTGGACCAG
Seq A exon
GTAAGCGTCCCAGCCCCTGCAGACAGAAGCTGAGTGGACCTCGTTTACCTGTTATGGATGAAACTGACCTTGAGGGGACATGAGGAGAGCCATTCCTTTGTACTTTTGTCATGCTCTTCAATTGGCACAAATTAATTCACTTCTGCAATACTTTCCTGAATAGCACAGTAGTATTGGAAATCTGCCTATTACAGAACCTGGATGGAGTCCAGAGAGGCACGGGCATCCATGGGCAAAGGGCTCGTGAGAGTCACCGCCCTGCAGCGCTGTGTCCTGAGAAAGGAGGGGGCAGAAGCCTGAGCTTCTGGGGGTCCTTCCCAATGGCCTGGCCCACTGGATGTGCCCTCCTGAGCTGACCGTCCAATCCCTTGCCCTCTCTGTGCCTACGTTTTATTAGTTACAGCCAGATGGTTACTGTCAAATCAAATGATAGATTTCATTTTCAGTATGTAATAGGAAGCCCCTCCCTCACCCTAAAGTCTCAGCTGCCCTCTAAGACTAGTACTCTCTAAGGTACTAGTATCCCTTCCTCAGAGACCCTTTCCCTGACCCCAAAACTAGGGAAGGTCCCTTAGTTATTTGCTCTCACAGACCACGCATTTACCTCAGAGCATATTCACTCATTCAGCTGTTACTTACCAAGCACCTACTGGGAGCTATACACTGTTCTATGTGCTAGGGATACCTCTGTCAGTGAACAACACAGACACAAAGATCCCTGCCCTTGTGGAGCTGAAATCTGAATAGAGGAGGTGAAATATACAAAAATTATAATAAATAAGTAAACTAGGCCAGTTGTGGTTGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCCAAGGTAGGTAGATCACCTGAGGTCAGGAGTTCAAAACCAGCCTGGCCAACATTGCAAAATCCTGTCTTTACTAAAAATGGAAAAATTGGTCAGGCGTGATGGCACACGCCTGTAGTCTCAGCTACCTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGCAGAGGTTGCAGTGAACCGAGATCGGACCACTGCACTCCAGCCTGAATGACAGAACGAGACTCTGTCTCAAAAAAAAAGTAAACTATTAATATGTAGGATAGGCCAGGCACGGTGGCTCACCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCGGGTGGATCACCTGAGGTGAGGAGTTCAAGACCAGCCTGGCCAACATGGCAAAACCCTGTCTCTACTAAAAATACAAAAATTAGCTGGGTGTCCTGGTGCATGCCTGTAATCTGAGCTACTCAGGAGGCTAAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGTGAGCCAAGATTGCGCCATTGCACTCCAGCCTGGGCGACAAAATGAGACACCATCTGAAAAAAAAAAAAAAATATATATATATATACACACACACACACACACACACACACACACACATATAATACTAGAAAATGATTGTTTATAGGCAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAAAGGAAAGGAGAAGGAAAGAAGGACCAAACATCTTTTGTAGAAATATGTTTGCTTTCATCATAACAGCTTGTTATCAAGGATGAATTTCTCCCTGAAATTAATGGAGGCACAGACTGGAAAGTTTAAAGTGGCTTTAAGAGGTTATTTTATTTAGTCCTCTGTCTTAATAGAAGCAAATTATTATCTCTGCTCCTTAGGTAGAGTAGCTAAGGCTCAGAAAGTAGGCCGGGCGCGGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCCAACGCAGGTGGATCACCTGAGGTCAGGAGTTTGAGACCAGCCTGGCCAACATGGTGAAACCTCGTCACTAATAAAAAAATACAAAAACTTAGCCAGGCATGGTGGCGGGCGCCTGTAATCCCAGCTACCCAGGAGGCTGCGGCAGGAGAATCACTTCAACCCGGGAGGCAGAGGTTGCAGTGAGCTGAAATCACACCACTGCACTCCAGCCTTGGTGACAGAGAAAGATTCTGTCAGGAAAAAAAAAAAAAAGTTTAAATGAATTACCCAAGGTATATAATTGTTAGTGTTAGAAGGAAGAAGAAGGGAGGGAGGAAGGAAGGGAGAAAGAAAGGGAAGGAGGAAGGGAGGGAGGGAAGAAAGCCTTTATTTATCTATGGGGTTCCCTGGAAAGCAGGCTGAAATGGAGATTCACGTGCAGGAGTTTAGATACTCTGGGGAACTATACTTGTAGAAGGGAAGGAACAGGAACAGGGCAGAAGGAGAGGTCCGGTTGTGATTCTGCCTCATCCAACCCCACAGCGAGCTCTGAAGCTGGGGATGGCTCCTCAGAGTTGGTCCAAGTTGGGACAAGGGAATCAGACCCTGGGGAGAGCGTAACCTTGATCAAGGCGACTCTCTTTAGCCCAGGGCAATGCCAGGAGAAGGCTGAGAGCAGAAAGCCATCTACCATCACACTCTCAACAGCTACGAAATAAGTCCTGCAGTTCAGGAGGGAGGTCTGGGCGGCACATCTCAGGACCCTCTATCTCTCAGGGTAGAGGAATTAAGAATGGGATGGGAACCAGACGGGCCATGGTGGCTCACACCTATAATCCCAACACTTTGGGAGGCCAAGGGTAGGAGGATTGCTTGAGCCCAAGAGTTCAAAACCAGCCTGGGCAAAAACAATCAAACAAACAAACAAAACACATTTAAAAAATTTGCTGTGTGTGGTGGTGTGCACCTGTGGTCCCAGCTACTCAGGGGGCTGAGGTGGGAGGATTGCTTGAGTCCAGGAGGTCGAGGCTGCAGTGAGCTATGATCATGGCACTGCATTGCAGCCTAGGAGACAAAGCAAGACACTGTCTCTAAAAAAACAAAAAACAAACAAATAAAAAAACGGAACCGGTTGCAAGCAGGGTTAAATAGCGTGGTCAGAGTAGGACTCACTGAGAATATGAGATCTGAGTCAAGTCTTCAAGGATGTGAGGAAGTAAGTTTCTGGCAGAAGAGCTGTGAAGGGCTGTCTGGCCAGAGAAGATTGCAATGCAAAAGCCCTGAGGTGGGAACGTGTTTGGTGTGTTTAAAGGAAAGCAATGAGGCCAGTGTAGCCAGAACAGAGTGTGCAAGGAGAGAAGGAACAGAAGATGTGGAGGGCAGATCAGTTTGTAATTGTACGCCCAGTATGCTGATTCTTTGTGTAATCTCCAGACTGTATTAAACTGCAAGAGCAGGGCCCCTCTCTGGCTTTGCTCATCATTGTATTCCCAGAGCCTTGCACAATGCTTGGTGCATAGGAGATGGAAATTTGTTAAATAAATGAATTATGGATAACGAATGGATGGTAAGATGGGTGGATGGATGGGGGGTGAACGGATGGATGGGGGGTGAATGGATGGATGAATGGGTAGATGGGTGGATAGGGGGATGGCTGGGTGGCTGGGTAGATGATGCACTGTCTCCCAGATGAGGACCTTTTCACCTTTACTCCATTCTCTTTCCTGCCCTTTAG
Seq C2 exon
GGAGCCCCTCTGGCCATGCCATGGGCACAGCAGGTGTATACTACGTGATGGTCACATCTACTCTTTCCATCTTTCAGGGAAAGATAAAGCCGACCTACAGATTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000131482:ENST00000253801:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0156916=PAP2=FE(25.0=100)
A:
NA
C2:
PF0156916=PAP2=PD(36.6=94.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development