DreINT0071928 @ danRer10
Intron Retention
Gene
ENSDARG00000068006 | gck
Description
glucokinase (hexokinase 4) [Source:ZFIN;Acc:ZDB-GENE-060825-204]
Coordinates
chr8:40442276-40445738:+
Coord C1 exon
chr8:40442276-40442375
Coord A exon
chr8:40442376-40445076
Coord C2 exon
chr8:40445077-40445738
Length
2701 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
3' ss Seq
TGTCCATGTTTCTCCCTCAGGTA
3' ss Score
12.39
Exon sequences
Seq C1 exon
GACTTTGAAATGGATGTGGTGGCCATGGTGAACGACACAGTAGCCACCATGATCTCCTGCTACTATGAAGACCGCAGCTGTGAAGTCGGCATGATAGTAG
Seq A exon
GTAAGAGAGAGCAAACACACCAGCACACACACACTTACAGCCATGTCAATATAATTACAGCCTGGATATAAACTTTACAACAGGCAGATGGAATATTTTAACAACCACTGGAGGAAAAAACAGCAATAAAGGAATATGCCTAAAGCTTTTAGATGAGACATCTGTAGACAGTTTTTCACGCACCTGTTTTAGATTCAGGGTGGTTTTTGTGTCAGGAAAACAGACAAATACACTTTTAGGTGTTTCTACTGTGATTTACATTATCAAACTATGCCAGTAAACTGCAAAAATAAAATGATTTATTTATTAACAACTTTGTGTTTGGTTTCTAGTACAAATCTCGAAACAATTCTTAAGTCAAGAAGCATTTTCCAGACAAGCAAACAATATTGTCTTGTTTCCAGAAATAATAAGTCAAAATTAAGTGTTTTCCCTCAAAACAAGCAAACACAGAGTTATTTTGAAACAAGATTATTTTGTAGGAAAAGGGAAAAAAAACTCTATTAATTTCGATGTATTGTTTTTGGAGACAAGACAATATTTTTGATTGTCTAGAAAAGGCTTCTTAAATTAAGAATTTGTTTTTCGAGATCTGGACTGGAAACAAGACAAAAACTCTGAGATCCAACTCCAATTTCACAAAAATATTTCCCCCTAGCAATAAGCCATACATCTCCATATCACCAGCTCTTATTTCACAGACCTAAGTTTACCAATACTCCTTTATATCTATATTATAAAGGTTTGTACACAGATAGATTCAACAAAACAAAATGTGTGTAGTATTATCTGAATAATGAAGATGTCCTTCAATCCTCTTTTTTATTCTAAAGCAGTGGTTCCCTAACTTTTTGCTGTGTGCACCCCTTTCTAATATTAGACATCTGTCAAGCACCCCTTTCTCTGATTAAACTCCACATTTTTTACGGCAATAGCTAAATACACATATTTTCTGTATACGCAATTAGAATAAAAATAATAAAATTTGTGAATTTAAAGGACAAGCTTTTATGAAGTTAAAGATTTTCACAGCGTCATTAAGTACAGACAAAAGTTCATCTGGCATGTTTTACATCGCTAGAGCTTCTTGGTGGATGCTGCAGTGTACCTAAGAAACCGATGGTGCAACTTTTCGAATGAAAGCTACTACTTTGTTCTTTCAATTTTCCTTAAAAAAAAAAAAACTTACTGGCATGTCTTGTAAGTGTCTGTGTCTTGTTTGTAAGTGCCGGACCATATATGAGGGCTTACGACTGCTATTAGCTAAAACCTCATCACAGACTACACACTGCGGATTTGGATTTTCTGCATCTCCAATCCATGTAAACCTGAAACCAATAAAACTTCCACTATGTTTGCGTTTCTTACTTGACATTTTCTTACTCTCTACCCTGATTCTTTTCATCAGTACATCTCTGCTGGATTTCTCTGTTTCCGCCTGAGCTCCTTCACCTCGTTCGTTATCCTCCGAGTCCATATGTTTAACGTTGGTGCAGATCTCCATAGAAGAGGCCGATGTAGATGGATCCCTTCTGTCACTTGACTTTTTAAAGTGCCAGTTTTTAATCAGGTGTCCATTTTGTAGACTATAGTAAGCGGAAAAAAAATTACAAATGTACTATCACTTAGCGCCTAATGTGACAGGGCGTGGCTATTGTGACACAGACATGGAACAGCAAGATGACTATGCATAGGTTGTAAATTACAATTTTTAATGTGATTTTTTTGTTTGCTTATTTGTTTCTCTCTCAGTGAATTTCTTTTCTCTCAGAAATATGACATGTGAAGTTTACCCAAAATAAATGCATAAAAATAAAAGATAAAATTTTCTGTCATTACAAACATTCTCTCATGCACCCCTGGTGGTCAGACTGTGCATCCCAAGGGGTGCACGCATCCCAGTTTGGGAACCGCTGCTCTAAAGCACAGGTCTCAAACTATATTCCTGGAGAGCCACAGCTCTGCACAGTTTTGCTCCAACTTTAATCAAGCTGATCCAACTAATCAAGGTGTTCTAGACTATTAGAAACTATTAAGCAGGTGTGAGTTGGAGGTGGTTGGAGCTAAAGTGTGCAGAGTTGTGGCCCTCCAGGGATTGAGTTAGAGACCATTGCTCTAAAAAACAAAGCAGTGGCAATTTAAAGAAGCAGTCCCAAGTTTTCATATGTAAACCGATTTTAAGAAAATACACAGCGGTTCCCAGAATCGGGGTTGCTTGGTGATTTCCTAAAACCAAATTCATTTGATTAAACTATTAGAATTACCATATTTTATCGATAACCCTTCATTCAGTTATTCATTTTCTTTTCGACTTAGTCCTTTTATTTATAGATAACCTGCCGAAGATAAAAATAGCAGTTAATAGTTACATAAAAACAAAACAACATGCTATTTTTTTTCTTTCTATTGGATTGTGACCCCAGAGGTCATTGAATTAGATTATTGTCTATTAATAAGATAATTTAATTCTGTTAATTTGGCTTATTGGAATGAATGCACCATTGAGTGGAGGAATTTTTATTGTTAATCACCTCAGAGGATATTGGGGGTCACAAGTCACTGGCAGTGTTATTATTTCAGGGGTCACAGGCTGAAAAGTTTGGGAACCTCTGGCTTAATGTAATCAGTCATCTGGGCAAGTTTTAACTGGTTGATTTGACACCATTCACCTGCAATGTTTCTGTCCATGTTTCTCCCTCAG
Seq C2 exon
GTACAGGCTGCAATGCGTGTTATATGGAGGAGATGCGTAAGGTGGAGCTGGTTGAAGGAGAGGAGGGCCGGATGTGTGTGAACACAGAATGGGGGGCATTTGGGGACCACAGTGAACTGGAGGACTTCAGGCTGGAATACGACCGTGTTATTGATGAGACGTCACTCAATCCTGGACATCAGCTGTGAGTGAGAATGCAAAATAATCATATTTAAAATTTTGGAGTGGAAAAAATAACAGAAAAGCACACTACATTATAAAAGTGATGCCACTGAAAACAAATGTGGATGTAACTCTTGATGAATCACGAATAAGGCCAACTCCTAAAGCGACGGTTCATCCAAAAATGGAAATTTAATCATCATTTACTCTCCCTTTAGCTGTTCCAAAACGGTTTCTTTTTTCTGTTGAACACAAAAGAAGATATTTTGAAGAATGTTTGAAATATGTAACCATTGACTTCCTCAGTATTTGTTAAAATTAAACTGAATAAAAAACTGATAAATGCTTGGAAACACTTTAGGCCAGGGTTTCTCAACCAGTGGGTCACGGCCCACTAGTAGGCCTCAGTGATCCTGCGGGTGGGCCGCGAGATAGCTTAAAATTACCTTAATTGTACTATAATTATTTGATTTCATTATTAAATATCTTTTATAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068006:ENSDART00000085559:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.012
Domain overlap (PFAM):
C1:
PF0034916=Hexokinase_1=PD(11.1=67.6),PF0372711=Hexokinase_2=PU(11.4=23.5)
A:
NA
C2:
PF0372711=Hexokinase_2=PD(87.1=96.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]