DreINT0074398 @ danRer10
Intron Retention
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58371611-58371822:+
Coord C1 exon
chr1:58371611-58371660
Coord A exon
chr1:58371661-58371738
Coord C2 exon
chr1:58371739-58371822
Length
78 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
GTCTCTGGCTCCGTCCTCAGATC
3' ss Score
10.99
Exon sequences
Seq C1 exon
CTGCCATTAACCTGGAGAAGCTGAAGCTCTTCAGGCAGTATTATGTGATG
Seq A exon
GTGAGTCTTCTATATTATTGAGCATCATATTTAACCCTGTGCTCATTGGTTTGAAACCGTCTCTGGCTCCGTCCTCAG
Seq C2 exon
ATCGTGTGTTATATCTACTTCACGCGCATCATTGCTTTAGTGCTGAAGGTCATGGTGCCGTTCCAGTGGCAGTGGTGTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651:ENSDART00000152747:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(6.1=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTAACCTGGAGAAGCTG
R:
CTCTTGACACCACTGCCACTG
Band lengths:
133-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]