RnoINT0066913 @ rn6
Intron Retention
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9713199-9713464:+
Coord C1 exon
chr9:9713199-9713248
Coord A exon
chr9:9713249-9713380
Coord C2 exon
chr9:9713381-9713464
Length
132 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
3' ss Seq
TGCCAACCCCATGCCCCCAGGTC
3' ss Score
7.56
Exon sequences
Seq C1 exon
TGGCAGTGAACCTGGCCAAGCTGAAGCTGTTCCGACATTACTACGTCATG
Seq A exon
GTAGGAGTCCTGCCTTCCCACCGCCTGAGTCCCTCCCTGCTGGCCTCTGTCCCTGAGCCCCAGCCTTGACCTGCCCTCTGTCCTTGTGCCCCATCCCTGTCCCTTTTCCCCCTGCCAACCCCATGCCCCCAG
Seq C2 exon
GTCATCTGCTATATCTACTTTACGCGCATCATCGCCATTCTGCTTCGAGTGGCAGTGCCCTTCCAGTGGCAGTGGCTGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128:ENSRNOT00000075403:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=FE(5.5=100)
A:
NA
C2:
PF068148=Lung_7-TM_R=FE(9.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGAACCTGGCCAAGCTG
R:
TGGTACAGCCACTGCCACT
Band lengths:
130-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]