DreINT0074400 @ danRer10
Intron Retention
Gene
ENSDARG00000096651 | gpr108
Description
G protein-coupled receptor 108 [Source:ZFIN;Acc:ZDB-GENE-121214-129]
Coordinates
chr1:58371904-58373910:+
Coord C1 exon
chr1:58371904-58372025
Coord A exon
chr1:58372026-58372725
Coord C2 exon
chr1:58372726-58373910
Length
700 bp
Sequences
Splice sites
5' ss Seq
AGTGTAGGT
5' ss Score
3.31
3' ss Seq
CTTATTGTCTTTGTACGCAGTGT
3' ss Score
7.55
Exon sequences
Seq C1 exon
TTGTTAGTGGAGGTTTCTACTTTGATTTTCTTTGTCTTGACGGGATTCAAGTTCCGACCGGCGTCCAATAATCCGTACCTGCAGCTGCCTCAGGACGAGGAGGACCTGGAGATGGATGAAGT
Seq A exon
GTAGGTCTAGTTTTTGTTGTACGATATATTGCACCAATATCTATTGTGATGTTATTGTCATTTTAAGGCCATTTTATGCCATTCAGCGCATCAAAACAAAAAAAACGAGCATAAGGCGTTTTTTTAATATGACGCTTTTGCGCCTGCCGTTTTGCACGTTGGTGTGCACGATCACATTGACGCCCTTTATTTAGTCACGAGGCGTTAAATGTCGACAGAAAACGTAACAAAAAGTGTGTAGGGCCTTTAAGATGTTTTAAACAGGTCTTAATTTTCCTTTGTCTATGTAAAGATACGCAACTGGACCAACTTCCATCCAATCAAGTTACATTTATGCGCTCTATTTACTAACATGATTTAATTATTTTGCTTTCGTCCTTACAAATATATTTGTTTGAAAGTTTTAAAATGTTTTTTTTAGACACCCGGCGAGGACACTGACCTGAACACACTGTTGTGCATACATTTAGTTCATTATAGTTTATAAAAGTTTGTCTTTTTTTTTTTTTTTTTTTGGAAAAGTAATGCTGAAAAGTACATGTATATAACTAGGGTTTACTTGTTTTTTTACATTATTTGAAATGAATTAATAGTTAACAAGAGGGTTAATAATTCTGACTTTGAATGTTTACTACATATATATATATATTTATATATTTATTTATTTATTTATTTATTGTCTTATTGTCTTTGTACGCAG
Seq C2 exon
TGTAACCGAGTCGGGAGTGTTGGAGGGAATCCACAAGGTGAAGAAAACGTCTAACGGCAGAGAGAGACAGAGAGAGGTCGCACTGTGAGTGGCATATTGGGAGGGCGGAGCCTGGACTCTGAAGCCCCTCCCTTTACCTTCCCCAGGTTGCTCCCATGGCTACCACAGACTCACTATGCAAGTGAAAAACAACAGAACGGAAGAAAACGAGTGTGAATGAAGCACGCCTTATACGACTTCTGTCTGGTTTTCCTGAACGGATGAGCTGAACCTCTGTACAGACACTGGGACGGCGGTGACGCAGACTGAATCTGTTTGGTTTTGGTTTACAGTAATGATGTCGTCAGTCTGCGCTGTCTGTTAATTCGTTTGCTCATTTTCCTCCTTCATTCCAAAGATTTGCAATCATTATAATGAAAAACGGTTTGTTTGATTTTAACCTTTTATTTCCTCGTGTCTTTATTATTTAACCGATGTTATTGTTTGTATATTATGTTTTTTTCTTCTGTTAATTATTTGATAAGATGGCTGGAGAGAGGCGACTCTTCAACAGGATCGTGAAGCTGGCGTATATAAATTTAAAGCACACTGGGACAGATCAGAGTTTGGTTGTTTGTTTTTTTTTGCTAAACTGTCATCAGTTATGCTGAGGAATTGGAGAATTATTATTTATAAAACCAGTGTTTCATTTGCTTCAAATGGTTGGGATTTCTTTAACTAGGTTGATTTTCTAAAGTTATATATTTCTTTAATGCGTGTTACTCCCACATTAAAGGTCTGCGGCTGTTAATTTTCTATTCTGTCCTGAATGAAATGTCACTTCAGTCTTATCGCGTCACACAACACTGCTTTATTTATTTTATTCTGATTTCCCCATCTAAGCTATTTGTCCCTCATTCTATACAGATCTTAGTAATAGTAATAGAGTAATAAATAAAGCACAAACCACTGTTACGCCGCGTCTTACAGCAAACGCGACGCGCGGCCATAATCAACGGTCAGCACAGAGCGCGGGAAACTATTGTTGACCTTTGACATTACCCTTCAAACCAACTTTTAGCCATTTTTGTTCCTGCAGTGCTTTGAAAATGGCTAACGCTGTGAGGAAACTCTTCCTGCTTGATTTATGTTGCTGGTTTATCCTGTCAGTTGTGTTCGAGTGTCAAATAAATCGAATAACTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096651:ENSDART00000152747:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PD(9.1=58.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGGGATTCAAGTTCCGACC
R:
GGTTCAGCTCATCCGTTCAGG
Band lengths:
356-1056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]