RnoINT0066915 @ rn6
Intron Retention
Gene
ENSRNOG00000046128 | Gpr108
Description
G protein-coupled receptor 108 [Source:RGD Symbol;Acc:735149]
Coordinates
chr9:9713570-9714755:+
Coord C1 exon
chr9:9713570-9713697
Coord A exon
chr9:9713698-9714314
Coord C2 exon
chr9:9714315-9714755
Length
617 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGA
5' ss Score
1.71
3' ss Seq
TGCTGTGTACCCTCTCCCAGGAT
3' ss Score
9.22
Exon sequences
Seq C1 exon
CTCTTGGTGGAGAGTTCCACCCTGGCCTTCTTCGTGCTCACCGGCTACAAGTTCCAGCCGGCGGGGGACAACCCATACCTGCAGCTGCCACAGCAGGAGGATGAGGAGGACGTACAGATGGAGCAAGT
Seq A exon
GTGAGAAAAGCTGCAGGGCGTGGCGGGGCCAAGCATCTTTGGAGCTGCCCCAGAGCACTCCACAGGGCCATAGGGCAGGATTGTGGGTGGCGGAGCCAAAAGGAACTAAAAAGGTAGGGAGGGTATGGGTGGCTCTAATGCTGCTCCAAGTGGTGCTTGGAGATGCCTAGGAGTGGGACAGGGCTGGCTCTGAGGTGGCTGCCGAGGATGAGGGTTAGGATCTAGGTGACCTCATCTAGGGATGTGGATTGGTGGGCAGCTCGGAGGCTGGCTCTGAGGTGGCTGCCGAGGATGAGGGATAGGATCTAGGTGACCTACAGGGATGTGGATTGGTGGGCAGCTCGGAGGGTGGGCAGGTTTGGAGTCACCGTAAGGACAGGATTAGAGTGTTGGTAGGGGAGGATGGGCTGTGGCATCCAAGTCTGTGGAGCCTCAGAGGCAAGCTGGGTCAGGACCAGACAGCTCTGGAGGACAAGACTATGTATTACCCACCTGCTAGGCCCAGGGGTGGGGAGGGGAAGGATGGAATGGGAGTGGGTGGGGCCAAAGCGGCTCCTGGACAGGGTCTGCTCACACTCAGGGGCTAGACCTTGCTTCTGCTGTGTACCCTCTCCCAG
Seq C2 exon
GATGACAGACTCTGGGTTCCGGGAAGGCCTGTCCAAAGTTAACAAGACAGCCAGCGGCCGGGAGCTGTTGTGACTTCCCCGTGTTCAGAGATCCGCCTTCAGACCTTCTGCACCTCGCTGCGCTACACTTGTCCCCAAGTGTGCAGGGAGTCCAAGAGGAAGCTGCTCACAGGGCACCAGGGCATGGATCCCAGGGAGCTTTTCAGAGAAGATGCCCTTCTCCCAGCAGCACCACCCTCTCCTCGCCGGGTACCCTTCAGCCTCTTGTACAATAAGGACCAGTCTCCTTTTCATTTCTTACGTCTCCTGACTTTGAGCGTTCTGAGTGTCTAAGGCAGTCTGCATTTATGATCTTGAACCCTGAATTCCAGTCCACATGGTGGCTCTGGAGAGCCTGGGCTTCATAAAACTTTGATTAGTAAACAAATAAAGAGAAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046128:ENSRNOT00000075403:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF068148=Lung_7-TM_R=PD(8.3=55.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGACGTACAGATGGAGC
R:
ACTCAGAACGCTCAAAGTCAGG
Band lengths:
352-969
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]