DreINT0074553 @ danRer10
Intron Retention
Gene
ENSDARG00000054874 | gpsm1b
Description
G-protein signaling modulator 1b [Source:ZFIN;Acc:ZDB-GENE-110203-5]
Coordinates
chr5:70957064-70959690:-
Coord C1 exon
chr5:70959537-70959690
Coord A exon
chr5:70957270-70959536
Coord C2 exon
chr5:70957064-70957269
Length
2267 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
TTTATGTGTGTGTGCGTCAGATG
3' ss Score
7.31
Exon sequences
Seq C1 exon
AAGCTGCCTCGAGATCCGTCAGATGAGGACTGCTTCTTTGACCTGTTGAGTAAGTTTCAGAGCAGCCGTATGGATGACCAGCGCTGTCAGCTGGACGAGACGCCCGACGGAGAAGAAGCCGGAGCCGATCAGAACACACTCAATGACATGATCG
Seq A exon
GTGAGCTCTGAAACACACTGAGTCTCTCCTGCTCCTTACTCTCCTGCCCCCATACACACTGCATTACACACACCTAAGTATTTTTTTAAGCAAAGATGATGTAATAGATACATAAATACATGTAAATGTGCATACGGTTAAAAATAAATCTAAATATTAAACAACTTGTACTGATTTCAGATGCTGCTGACCAATAATTGCCTTATTACAGTCTTGTGAAAAGCATCCATTAAACACAGAGCTATATATCACCCGTCCAGATGAGCCTGCTGCTTTAAAAGCTCATTAATGACTGCCTGTGCAATACCGCTCTTTGTCATGAGCCGCAGTTTCACTATTAACTTAAAGGCGAGCTTCTTTGGAGATGATGTATAGTGGTGAATTTTACATTTAGTGGCCATTTGCGCCGGACATGCAGTGAATGCAACACATCGAGATTCAGGCCATTAATCAGCTGATCCACTCCGAGTCTTTCTGCACTCTCTCTGAAATCACTCGATCGATCTCAGTTGGCGGATCAACGTTCGCCACATGATCGCTCTCATCAGCGCCATTATTTGTAATTTTGGGTGGGTTTGCAAACCTGTGCACTTTTTCATTGTGTCTTCCTCAGACTTCAGCAGTTTGCATTTCCCGCAGTCACAAAAGCTCCGTTATCCAAAACAGGTCACGCTACAACCATTATGCAGTCGCACAAATGTTTCACAAATATATTACGAGGTCGCATAGATTACATTTCGGGCGCATATGTGACCAAAACGATCGCAATATCAAGCCCTGTATGCCGTTGTGTAAATAAGATATTACAGACAGCTATTTAGCTTTTTAAAAGTTGTGATCTAGCGCTAAATAGAAAATGAAATTAACTTTACTTCAAGGGGGGCAGGTAAAGTCGTTGGGAAGGTGGGACGCACCCCTTAATATAATGGTAGGGAATACACTGCGTAGTATCACCATTACAGAAAAATCACACTAGTTGTTTTGTTACCATAGCAACTTTAGAATCACCACAATAGATCAATTACTAAAGTTGTTGTTACCATAGCAACTGTAGAATCACCACAATAGATTAATCATTATAGTTGTTTTGTTACCATAGCAACTGTGGAATCACCACAATAGATTATTTACTAAAGTTGCTGTTACCATAGCAACTGTAGAATCACCACAATAGATTAATCATAATAGTTGTTGTGTTACCATAGCAACTGTAGAATCACCACAATAAATTGTTTACTAAGGTTGTTGTCACTATAGCAACTGTAGAATCACCACAATGGATTCTTTACTAAAGTTGTGGTTACCATAGCAACTGTAGAATCACCACAATAGATTCTTTACTAAAGTTGTGGTTACCATAGCAACTGTAGAATCACCACAATAGATTCTTTACTAAAGTTATGGTTACCATAGCAACTGTAGAATCACTGCATACGATTAAATACTGTAGTTGTTTTGTTACCATAGCAACTGTAGAATCACCACATCAGATTAAGTACTGTTGTTGGTGTGTTACCATAGTAACTGCTGAATTACCACAACAGATACATTACCATAGTTAATGTGTTACCATGGCAACTGTATAATCACCGCAACAGATCAATGACTGTAGTTCTTGTTACCATAGCAACTGTACAATCACCACAACAGATCAATTAATGTAGTTGTTTTGTTACCATAGCAACTGTAGAATTGCAACAACACATCAATTCAAGTAATTTCCTATAGTATGCTTCAAAACAGTATTTGCTCTAATTTACTGTAGTATTTTTTTTTCATGTCGGAACCCGGAGGATCGTTATCTGAGTAAATCTATGTAGTATAATAATTAAGTCCGCTGTACTTAAACATGACTTACTGTAAGTAACTTGGTTAGCTTCTCAAGCCCAGACAAGAAAGATCTGAGAAGTTTTATAAGCTCAAAACTTTAAGGTTTACCCTCTTGATATCATGTTGCTAGCGTGATTTATTATGTCGTTCTTATGTTGCTTTAGCATTTTTAAGATGTTGCTAGCATAGATTAGCACACTGCTATTACGCTAAGCTAGTGACTGATAGCCACAAGGTGATAGTTGTGTGTTGCTTTGATGCCAGTCTATTTCAACATGTCGCTATCATTTTAACACGTTTATTGCATGACCGTGTGTCTTTAGTATTTTAAACCTGTCGCTAGCATGATTTAGCACACTGCTGTTAGGTGCTAGTAACCGATAGCCACATACTGATATTTGTTTATGTGTGTGTATATTTATGTGTGTGTGCGTCAG
Seq C2 exon
ATGCCAGTCTGCTGACGTCTCCTCAGACAGAAGAGCTGTTTGACCTGATCGCCAGCACTCAGAGCCGCCGTCTGGATGACCAGCGGGTGAACGTCAGTAATCTGCCCGGACTCAGGATTACCCACAATAACCTGGGGCACCTGTGCGGAGACGGAGACCCTCAGGAGCCCAGCGACGACTTCTTCAACATGCTCATCAAGTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054874:ENSDART00000011955:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=NA C2=0.623
Domain overlap (PFAM):
C1:
PF0218812=GoLoco=WD(100=44.2)
A:
NA
C2:
PF0218812=GoLoco=WD(100=33.3),PF0218812=GoLoco=PU(47.8=15.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]