DreINT0077352 @ danRer10
Intron Retention
Gene
ENSDARG00000016527 | helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:ZFIN;Acc:ZDB-GENE-120920-1]
Coordinates
chr6:58596589-58602623:+
Coord C1 exon
chr6:58596589-58596664
Coord A exon
chr6:58596665-58599175
Coord C2 exon
chr6:58599176-58602623
Length
2511 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
3' ss Seq
GCCTTTCCCATTTTTTCCAGGAA
3' ss Score
10.87
Exon sequences
Seq C1 exon
GTGTTGGAAATCAGGTATAGACTGCGTTTGCTTGGACTGCCTCGTTTCACTGTAGAGAATGCTGAAAATGTGCAAG
Seq A exon
GTAAAGATTACTTGAATCTAAGGTCCTGTCTACACTGTCAGGTCTTGATTTTTTGTCTACATCTGATTTTTTTTTCTGTCCGTTTACATGTTCTTTTAATTGTGAACCATATCCGATTAATGTGTTTATACTTGCTAAATAATTTACGATGTCGCGCACGTTCAAAGGCGGGTTCTGGCATCTGCGCCACACTAGCCACGATGGAAGAAATTGTCTTGCTTTTAGCTCTGCGAAATATGCGAAGTTCACCCAACTTTAAAATGATTTTGAGGCGGTGGAGGGAAAGGGCCGTCATGGTAGCTTGAGCGTATGTTTTAAATATGGTGTCCTCCACCATTCAGAGGAATTTGTGGGTACAAGAGAGATCTCTGGTCTGGTGGGAGCAAATTGTGGTGACTGACCACTTTCCTTCTCCATGATTCCTCTGTTGTTGTTGTTGTTGTTGTTTACCTCGTCAGCGTCCACGTCGCTCTTCCTTCTACGTCACTAAAACGCAGAGAAGTACCACATTGTCAAGTTTAATGACGTACAAAATGGAACGCCTTAATAAATTTGATCTGCCTGTTCACATGATGGTCGCATTGTCACATATTCGATTTATATCTGCTTTATTTCCACATATGAGGGAGGCCTGAAACCGATGAATATCCGAAAGCATGCGTTTTTTTCGTGTTTACACGCTCATAGAACAGATCGGATGTGTGTCACATATGAGCAAAAAATCGGAATTGGGTCACATTTAACTGGTAGAGTAAACAAGGCCTAAAGGCAACCCAAGCTCATTCGGAAAAAATAGCCCCGCGGATGTTTCTGGGGGCCGCGATTTACGTGGCCGGAGGTACGTATGGCTGCATTTAGTTTTTTTCAAGCGAACGCTACGTGCCGGTGAGACGCCGGCCGCTCCTCTTTGCGCTTCGCCAGCTGGGCTGATGGCTCACCTCCTCCGTGTGGAGGGCTTTCCCGCCGCAACCAGTTTGTCCGGTTAGTTTGTCATGTTACGTCAGCGGAGCGGAGGCCCAGAGGAGGAGGAGCCGGCCGCGTTCGATGACCGGGATCGAGTCCGGGGAAGAGCGCTTCCAGAAATCAGGTTAGACAAAAAACAGAATCCAAAAAATAAAGCGAACGAGTTCATAACGAGGCGACAATGCGGTGAAATCCGAAAACGCGGTCAAAAACAGATGAGGACTTTTCTTTTTTTGCACGGTTTTTGTAAATCGTTGCTTGGGTTTAGGGAGAAAGGAGGAGGTTGGCCGGGTCGGCCGATTGGCTGGCCACCCATTCAAGTTCAGTCATTCAGCCAGTTGGTCAGTCAGACAGACGGTCGCTCGACAGCGGCCTCCGGTGGCTTTTTACGCGAGAACAGCGCGTGCGCGCAAGAGGCGTTCAAGACGCGAAAAAGCTCGCAGAGTGGCCTCTCGCGGATTCACAAAAACAAAAACTGCACAAATACGTACCTCTTGGGACGTATTTCACAGTCTCCAGAAACGTCCGCGGGGCTACGTTTCCAGAATGAGCCTGGGTTGCTTAAAGGACCTAGTATACTTCAAAAGAAATCGAAAGAAGAATTGGAATTACATCATTTTGAACAAAATTCGTCGCGACAGCTCACCAAAGCAAACATTTGGGGTAATTCCTTTTGGCTCGTACACACCTTTAAGCTACCATTGATAGGAATTGGTGACTGTGTTCTGAAACTCTTTGCCCTTCTATGACCTGTAATTGTTTCGTTTCTCATATCCTTGGAGAGGGCTACACGGTGGCTCAGTGGTTAGCATTGTCGCCTCACAGCAAAAATGTCACTGGTTCAAGTCCAGGCTGGGCCCATTTTTGTGTAAAGTTTGCCCGTTCTCCCCGTGTTGGTCTGGGTTTCCTCCAGGTGCTCCGGTTTCCCCAACAGTCCAAAGACAAGGAATTGATGAACTAAACTGGCCGTAGTGTATGAGTGTGTGTGAATGTAAGTGTGTATGGGTGTTTCCCAGTACTGGGTTGCAGCTGGAAGCGCATATGCTGCATAAATTTTATGCTGGAATAGTTGGCAGTTCATTCCACTGTAGCGACCCCTGAAAAATACGAGACTAAGCCAAAGAAAAATGAATGAATGAATTCATAGAGGTCAAAAAAACAACACCACCAAGTTAGCAACATAAATGCACTGGAGGGTGGAGTAGCAGAGCTGGTATAGATGTATATGCACATATACGATCGATCACAGAGAATTTTTTAAGACTCTGAGGTGTTCACACCACTACATTTGGTGTCTGTCCATGGTAAATGGAAAGCAACGTAAATAATTTAGCACAATGCACAGGCTAGAGGAGGCTGACAAACATTTACGAAACTGTTCTACTCTGACCATCGTTGTTTAGGGGTACACGCAAACAGTTGCCTTTAAAACAAAGATTGAAAAAGAACTTAATGTGAAGTATATTGGGGCCTTTATGCTATTCCTTGATTACATACAAACATGTATGCATGTGATTTACAGTGTACTGCCTTTCCCATTTTTTCCAG
Seq C2 exon
GAAAGCAGTTCAGAGTAATTGTGATTTCCACTGTGCACACCAAGGACAGCCTATTGGAGACGGACAGGACCTGTCTTGAGTTTTTCAATGACATGCGAGTCCTGAACACCATCATGACAAGAGCCCAATCACAAATATTTGTTGTTGGAGATGCCGCTGCACTTTCATGCCATCAGTTCGGTATGTGCTGGAGACTTTGGAGAGCATACATAGAGGAATGCATCAACAAGGAAAGTTGCCACGACCTTACTCTGGATTCTTTAAAGCAAGATCTCCTGGAGATTTCTAAACTCTGCAGGAGCGAGGATGAAGAGAACAGCGATAGTGAATCAACTACATCTGAACTACCGGACACTGAAGACCTAATACTTCAAGAGCTTCTTGATGAGAGCAAAGAAATCAATGTTGCTTTGACAGAGGAAGGATTATTTCCAGTTTTTCAAAATCAGGAAGCATTCAGTAGTGCAAATAACCAAGTTGCAGAAGTATATTATGAAGAGCCTATGTTTACTAGCTCTACTGTCCACAAACAGTGTGAGATAGTCAAAGAAGGTTATGACAGAGGATATGCAAAGCCACTTGACGAGTCCACTCTGAGAATAGACATCAAGGGTAGAGCGAACATCGGAAGGGCATTCCCTGGAGATAAAGTAACGGTGGAGATCCTGAGTGCAACATCCCATCCTCCAATGGGAAGAGTGATCAACATCCTTGAAAGTGCAGATACTGTCAAGGAATTTGTCTGCGCACTTGAAAGACATGACAATCAAGTAATGACGCCTATAAACAAATGCATCACCAAGATCTTCACACCCTTTTGGAAAGACAAACCAAACCACATTGCTGTAAGGAATCCTGAGAGCCTCAAAGTAGAGAAGTTTATCAAAATCAACGAAGAAGCTCACAGGAAATCTCTCTTTATTGTCAAAGTCCTTAGTTGGAGAAACGTTTTCAGATATCCTTTGGGGATTGTCGTAGGTGTGCTTCCTAAAATAGCAACTTTAGATGATGGATTGCATGTACTCAGCATTGAGTACCAGTTGAGAAGGACACTTTCCTCATCTCTGAGAAAGCAGATGCAATACTTACAACGTCTTGATATTTTCGAAAAAGGACGAAGAGATTTTCGCATGCTCCCAACCTTCACAGTTGATCCCGCACATTCGCAAGATCTCGATGATGCAATAAGTTTGCAGGATTTTGGTGAGTACCTTGAAATAGGAGTTCACATTTCTGATGTTGCAAGCTTTGTGGCTAAAGATAGCGAACTGGACAAATTTGCCAGACAGCTGTGTACTACATTCTACCCTCGTGAGAAGGAGCCAATATACATGTTTCCCAAAGAACTGAGCACCAATTTGTTAAGTTTAATCCCTAACCAGGACAGACGAGCAATCTCATTGATTATAGAAGTGGATGCACAGACTAATCGCATAAAGAGAAGATTTATCTGCAAGTCTGTGATTCACTCCAACAGGAAATTTTCCTACGATGAAGTTGAGGACATTCTTGAAAATGGTGAGCCGCTTTCCGACCTGCTTGAAATCTGTCTTGTAAAAGTGTCGAACTTTGCTGAGGTTCACCGAAGATACAGAAAGCAGGATGACTGGTGCTACAAGATGCCAGATGAGGATGTGACCCTTGGAAGAAGGAGATCTCACCAAATGGTGGAAGAGCTGATGGTCATGTTTAACCACATGGTTGCCGAACGTCTTTTATCTGATGGTGCAACAAGAAGCAAAACTCCATTGAGATGCCAGGACAGGCCTCAAACAGACAAACTCATTGAGATTTTTGACAAAAACGCAGCCTTGATTCCGCTGTCTGTTCACTTCTCAAGTCAAGCTCATGAACTGAATAAGCAAGGTTTGATCCAGCACAACCCTCAGACTGACTCAGACACGTTCCCTGTGTTAAAATCAATCCTCAGATGCCTGAAGTCAGCAGCAGAGCAGGAAAACATCTACAAAATAATTGACTTTGTTGCAACTGATGACATTCATCCTCAGCTTCTGCCTTTTGCTGTTGCATTTAGGCGGTTGTTTCACAAGGCGTGCATTCAGCGCTCAAACTCAACGCATGTCTCAAGAATAGGGCACTATGATTTAGATCTTGACAGCTATACATGGGCCTCATCTCCAGTTCGCCGATACTTAGATGTAATTGTGCAGCGCCTTCTTCATTCTGTGATTGACAAGACAGATGTTAAGTACACAACTCTAGACATTAACCTGTCTTGTTTGGAATTCTCCAGGAAAAATGATCAACAGTCGGCCTATGAGAGGAAGGCAAATGCTCTGCATTTCGCATTAAAACTGTCAAGCCAAAGTGAAAGGAAGGTGGCTTATATTGTGGAGCTCAATCCATTAGGGACAAACTTCAAAGTGTCCTTTCCACTTAACAGATCCTCTATATCAGAAAACTTAGACATTATGAGCAGGGATCTTCTGCTGGCTGTTCAGCCAGAGTTTGATGTAACAAACAACAGCATGATCCTGAAATGGGAGCGAAGGATATATTCATTCTCCAATTCTCACATCCATGCTGAAGTGAAGCAACAAAACCCAAACTCAGTTATGGCCTATGTCCCTGCAAAGACCTGGAAATGCATTGCAGATGCTATCAGAGAACAAAACTGGAATGCCATTTTTCCTCTTATTGAGGAACTTCAACGCAACTCTGGCATCAATGCAAGACAATTTCACGAAACACTGAGTGCTTCAAAATGCACGAAAAATTATGACCCCTTGCATGCTGAGCATTATGCTGAACTGTATCTGAGAATTAAGCAAGGTGAGGCGGTCGAAGTGCAGCTTGGTGCATCCACAGCTCGTGGTTTAATGACTCCATCGATTCAGCTGTTTGTTGTGCATCCAAAGTTTGAGATTTGCGTGGAGCATGTAAGAGATCCAGTCAAGTGTTTTTCTGAATACGCACTAAGCTCATCAAGGAGTTCATACAACTTGTACAAGGATTATCAGGCAATATGGAGACCTATGTGCGAGATGGAGTCAGCCTCCAGCGCTGTGGCTGAAAATGAGAGCATTCTTATTGTAGATGTGCCCTTGAAATGGGAAAACTCCAATCCGAAGAGGCTACAGGGGTTTTTTCTGCTCCCGCTTGACAAGAAATCTCAGTGGTCAATAGACTGTGATCTCAGAAACAGCTTCCTATGCATTCGAACGAGGATTCAGAAACAGAGTAGCCCATTTCTGGAGAGCGCTCAGAACACAGCGCTCATGGATATTCCTTCTTTCACTTGGGTAGTTCATGGTGTGATTACAGAAGCTGAAGAAACAGAGTCCAAAGAATCAACGAATCAAGAACCAAAGAGTTTGCGAATTGATTTTCTGATTAATCACATGCCCATGACAAACATTCCAGAACAAATATTCCACGAGAGGACGAGATTTACGCTGGAGCTGATTCCAAAGCTTCTGCCAGACGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016527:ENSDART00000154393:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(12.2=100)
A:
NA
C2:
PF130871=AAA_12=PD(25.4=4.5),PF0077314=RNB=WD(100=31.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]