RnoINT0070106 @ rn6
Intron Retention
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176734027-176737926:-
Coord C1 exon
chr3:176737851-176737926
Coord A exon
chr3:176737709-176737850
Coord C2 exon
chr3:176734027-176737708
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTGGCCCTTGTCTCCCACAGGGC
3' ss Score
11.67
Exon sequences
Seq C1 exon
GTTAGTGCACTGAGGCAGGAACTAAGGAGGCGGAACCTTGGTGAGGTGTCTGTGGGCAGCTTTGAGATCCTGCCAG
Seq A exon
GTAGGTGACAGAAATGTGGGTCAGAGGCTGGCTTAATAGGGAGGCAGCTCCCAGACCATTCCTTGGATGTGCATATATACGGTGGGACTGAGGTGGCCAGGCTGCTGGTCCTTCTTGGCCATCTGGCCCTTGTCTCCCACAG
Seq C2 exon
GGCGTGAGTTCCGGGTGGTGGTACTGAGCTCTGTCCACAACCGAAACAGTCTGCTCAGCCCTGGGGCACCAACCTCAGAGTTCTTTACTGAGCCCCGTGTGCTGAACACAGTCATGACCCGTGCCCAGTCTCAGCTGGTGGCTGTGGGAGACGCCGTGGCTCTCTGTTCCTCTGGAGCCTGCAGAAAGCTCTGGAAAAACTTCATCCGTGAGTGCATAGAGCATCATAGCATCTTCCCAGAGGATCTGTCGCTGGAGCAGATAGAGCAGGGTGTGGCCCAGAGACAGAACTGGGCCTCGTTGATGCTCAGAGCTTGGGACACAGAGGCGGAACACAAACCCACTGCACAGGACCTCCAAAGGCCCATAGCTGAAGGGACCATGGTCACAGTGAAGGCAGAGACTAGAGCCAGGGCAGCAGCCACAGCACAGACCGAAGCAGTAGCAGCAGGGGGCACAGCAAGAAGGAACTCAGCCTCTACAGATGCAGCCGCAGAAGTGTCCACCCTGGAAGGGTATGAGGAAGACTCCGAGTCTGACTTATGGCCCTCCGACTGGGAGCTCAATGCTGATGATGCCATCCTGAAGGAACTCCTAGATGAGAGCCGGCAAATGACTGTGACTGTGAGGGAGGACGGACTTCTGGACACCATGGTTTGCCCTGCATCCTCACAAAAGGCCCGACAATACATAAACCTACCCTCATCTGCGCTGCGGAAGTACCTGCGTCTAGACCCCAAACAATACCGCCGCTGCAGCTTCCTGCAGGAGACCTTTGAGAGAGCATTGGCCACTCCACTGGATGACATGGCCTCTAGCCCTATCCAGGTCAGGGGTCGTCTGAACTGTGGGATGGCCTTCACAGGGGATGAGGTGCTAGTACAGATCCTGGGACCAGCAGTCGATGACAAGAGCATCCCTGGAAGCCTGCTGGGTCGTGTGATGGGCGTGCTGAAGAGGAGGCGGCGTGAACTGGCCTTCGTGTGTCGGATGGATGAGTGGGACCCCCACATTATGATCCCCATCAATAGTTCTGTGACTAAGATTTTTGTGGCAGGGTTGAAGGACCCACAGCAAGTTCCCATCCACTGCCTCATTGAAGGCAAGGTAAAGCATGTGAGGCACGAGACTCTCAAGCGGGAGGACCGGAGCACCCGACTTTTCTGGGTCCGCATCGTCCTTTGGCGGGAACGTTTCTACTATCCACTAGGCATTGTGCTGGAGGTGCTGCCCAAGGCTGTCACCTGGGAACAGGGCCTTCATATCCTTGACCTAGAGCATGGCCTGAAGGCCCACACACCAGACCCAGCTTCTGTTTCCAAGGCTTTGCAGAAATACCACTCAGAGATAGACATGGCCGCTAGTCACCGAGAGGACTACCGCCGCTTCCTGACCTTCACTGTGGACCCCCAGGGTGCCTGCAACCTCGATGACGCTCTTAGTGTCCGGGACCTAGGCCCAGTGTATGAGGTGGCAGTGCATATTGCTGATGTGGCCAGCTTGGTGCCCAAGGATGGGGCGCTGGATGTGGAAGCCCGCCAGCAGGGCACTGTGTTCTATGCCCCCAGCAGGGAGCCAGTTCTCATGCTACCCGCCAGCTTGTGCCAGGAGGCGCTCAGCCTTCTACCAGGTCAGGACCGCCTTGCCATTTCTCTCTTCCTCACCATGGAGAAAGGTGGTGGTGGCCAGATCAGGAGTCTGCGATTTGCACCCTCCATAGTCCGCTCTGACCGCCAGCTGTCGTACGAGGAAGCCGAAGAACTGATCAAGAGACACCCTGGGGCTGGCCTGAAGCTACCAGCCCACCTGGACTCTGTGGAGGCCTGCGTTGTGGCTGCCTGCTACTTCTCTTGGATGTTACGTCGTCAACGCCTCCCAGCTGACTGTTACTATGAGCCGCCAGATGAGGACAGTGTGCTGGGCTTCCGCACAGCCCACATCATGGTCCAAGAGTACATGATCCAGTTTAACAGCCGTGTGGCCGAATTCCTTGTGGGCGATAAGCACACACAGACGCTCACACCACTAAGGTGGCAGCCCACACCCAGTAGGCAGCAGCTTGACAGTGTTTTCAAGAAGCACAGAGGACTGGTGCCTCTGTCGCTGCACCTGTGCCACCACTCGAACACCCACTATACCCCCAACAAGCGGCTGTACCTCCTGACTTCCCTCTGGAAACAAGTGCAGCTTGCAGCTGGTACTCGGGACTACAGCCAGATGGTGGACCTTATTGCTACAGAGGACATGCACCCTTCGCTGGCTCCTGCTTGCCTGGACTTCCGAAGGGCTCTAGGCCGCTCTGTGTTTGGTCGCTCCAGCCAGGGTAGGCAGCGACCTGCTGGCCACTACTCACTGCAGGTGGATTGGTACACATGGGCATCCTCACCCATCCGTAGGTATCTGGATGTGGTGCTGCAGCGGCTAATCCTGCTGGCACTAGGCCACAAGAGCTCTACATATTCTAACAGGGACATCGATGGGCTCTGCCAGGACTTTAGTCGCCAGTATGCGTGTGCCCAGAGCTACCAACGGCGGGCCTGCAGCCTGCACCTCGCCATCCAGCTCAAGACCCAGCCTCAAAACAAGCTGGGCTTTGTGGTGGATGTCGAGACGGGTGCCCGCTGCTTCAAAGTGCTTTTTCCTATAAATCGGGAAACCCTGCCTGATCCCTGCCCTATCCACTACCATTCCCTGCAGTTAGCTGAAAACCCCGAGGAGCTTGTGGGCCAGACAGGCTTGCGGCTTGTATGGCGGCGCCGCACGTACTCGGTGCAGGCTTCCAAGCTGCCTTTACCACATCTGGGCACAAGTTTTGATCCACTCACCCAGACTATAGACGCAGCCCTGTGGATGAAGCTACTGGTGCTGCTGAAGGAGGAGCGCTGGCCTGAGGTCGCTGCCCTCATCCAGGAGCAAGATAAGCTTTCTCGTCAAAGGGAGAAAGCACAGGTACACCAGAGCCGCTGTGGACACTTTATAGAGGTGGCCTATGAGCTGGGCAGTGGAGATACCCTGCAGGTTCAGCTCGGTTCCAGCCTGCAGCGGGGCTTCCTGGCACCAACCCTGCAGCTGTGGACCGTGGTACCTGGCTTCAGCCTATGTCTGGAGCACATGGAACGGCCGGGTGACTGCTTTTCAGGCCATGTGCACCAGCCCCTGCAAGACCAGTACCTCGAAGTCAGCCAGTACTCAGGTGTGTGGGGGCCACGCTGTGCCCTGGAGTCGCTCATGAGTGCGGTTGCAGAAAATGACTCCATCGTGCTGCAGGATGTGCATATCTACTGGGACACATCACAGGAGCAACTGCAGGGTACCTTCCAGCTGGAAGCTGCTTTTCTCCAGGAGAAATGTATCAACATCCACTTTGGCTGTTGCTACCTGTGCATTCGGCTCGAGGGGCTCCCTCTTCCCCTGGCTAGCTCACTCCCTGGACCTAGTGACCTTGGCCCCTTCCTGAACATTGACCCCAATACATATACCTGGGTGGCCCATGGGCTGTCTGGTGACTGGGACCATGAACTGGCTGGTGACTGGGACCAGGAGTGTGTGGATGATCGGCAGGAAGTTCCCAAACAGGTACATTTCTTCATCCACCACATGACCATGGAGAAGGTTCCAGAAGAGGTGCTGAGACCTAGCACTCGGTTCACTGTGGAAGTGCTATCTAAGCAGCTTCCTGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267:ENSRNOT00000017787:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF130871=AAA_12=FE(12.3=100)
A:
NA
C2:
PF130871=AAA_12=PD(25.6=4.2),PF0077314=RNB=WD(100=29.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCACTGAGGCAGGAACTA
R:
CTCCAGAGGAACAGAGAGCCA
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]