RnoEX0041517 @ rn6
Exon Skipping
Gene
ENSRNOG00000013267 | Helz2
Description
helicase with zinc finger 2 [Source:RGD Symbol;Acc:1306056]
Coordinates
chr3:176734027-176738868:-
Coord C1 exon
chr3:176738085-176738868
Coord A exon
chr3:176737851-176737926
Coord C2 exon
chr3:176734027-176737708
Length
76 bp
Sequences
Splice sites
3' ss Seq
AACCCTGGGCTTGTCTGCAGGTT
3' ss Score
7.41
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGCTGGAGTGTGAGGCCCTTATCCCACTCTCCTATGCCTTGACGCTGACCCGTGTAGTGCTGGCAGGGGACCACATGCAGGTCACACCTAGGCTCTTCAGCGTGCCCAGGGACAAGGCAGCAGGGCACATGCTGCTGCACCGCCTCTTCCTGTACTACCAGCAGGAGGTACACAAGATCGCCCAGCACAGTCGCATTGTCTTCCACGAGAACTACCGTTCGACGGCAGCCATCATCAACTTTGTCTCCCGTCATTTCTATGTAGCCAAGGGCAACCCCATCCAGGCCAGTGGCAAAGTCCCACGTCACCCCCAACACTACCCTCTCATGTTCTGCCATGTGGCAGGCAGCCCTGAGCAAGACATGTCCAGGACATCCTGGCTTAACTCAGCTGAGGTCACACAGGTCGTGGAGAAGGTGCAGGAGATCTACAACACTTGGCCTCATTGCTGGGGACCCCGGGAGCAGAGACACATCTGCGCTGTCTCTCATGGTGCCCAG
Seq A exon
GTTAGTGCACTGAGGCAGGAACTAAGGAGGCGGAACCTTGGTGAGGTGTCTGTGGGCAGCTTTGAGATCCTGCCAG
Seq C2 exon
GGCGTGAGTTCCGGGTGGTGGTACTGAGCTCTGTCCACAACCGAAACAGTCTGCTCAGCCCTGGGGCACCAACCTCAGAGTTCTTTACTGAGCCCCGTGTGCTGAACACAGTCATGACCCGTGCCCAGTCTCAGCTGGTGGCTGTGGGAGACGCCGTGGCTCTCTGTTCCTCTGGAGCCTGCAGAAAGCTCTGGAAAAACTTCATCCGTGAGTGCATAGAGCATCATAGCATCTTCCCAGAGGATCTGTCGCTGGAGCAGATAGAGCAGGGTGTGGCCCAGAGACAGAACTGGGCCTCGTTGATGCTCAGAGCTTGGGACACAGAGGCGGAACACAAACCCACTGCACAGGACCTCCAAAGGCCCATAGCTGAAGGGACCATGGTCACAGTGAAGGCAGAGACTAGAGCCAGGGCAGCAGCCACAGCACAGACCGAAGCAGTAGCAGCAGGGGGCACAGCAAGAAGGAACTCAGCCTCTACAGATGCAGCCGCAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013267-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.059
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(46.6=21.0),PF130861=AAA_11=WD(100=32.1),PF130871=AAA_12=PU(61.1=47.3)
A:
PF130871=AAA_12=FE(12.3=100)
C2:
PF130871=AAA_12=PD(25.6=4.2),PF0077314=RNB=WD(100=29.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGCTTAACTCAGCTGAGG
R:
TGTTTCGGTTGTGGACAGAGC
Band lengths:
173-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]