MmuEX6107656 @ mm10
Exon Skipping
Gene
ENSMUSG00000027580 | Helz2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:181231687-181236535:-
Coord C1 exon
chr2:181235752-181236535
Coord A exon
chr2:181235516-181235586
Coord C2 exon
chr2:181231687-181235371
Length
71 bp
Sequences
Splice sites
3' ss Seq
TGGACTTGTCTGCAGGTTAGTGC
3' ss Score
-1.32
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGCTGGAGTGTGAGGCCCTTATCCCACTCTCCTATGCCTTGTCACTAACCCGTGTAGTACTGGCAGGGGACCACATGCAGGTCACACCTAGGCTCTTCAGCGTGCCTAGGGACAAGTCAGCCAGGCACACGCTGCTGCACCGCCTCTTCCTGTACTACCAGCAGGAGGCACACAAGATCGCTCAGCAGAGTCGCATCATCTTCCATGAGAACTACCGGTCAACTGCAGCCATCATCAACTTCGTCTCCCATCATTTCTATTTAGCCAAGGGTAATCCCATCCAGGCCAGTGGCAAAGTCCCACGTCACCCCCAACACTACCCTCTCATGTTCTGCCATGTGGCAGGAAGCCCTGAGCAGGACATGTCCATGACATCCTGGCTTAACTCGGCTGAGGTCACCCAGGTGGTGGAGAAGGTGCGGGAGATCTATAACACCTGGCCTCACTGCTGGGGACCCCGGGAGCAGAGACACATCTGTGCTGTCTCTCATGGTGCCCAG
Seq A exon
TGCGCTGAGACAGGAGCTAAGAAGGAGGAACCTTGGTGAGGTGTCTGTGGGCAGCTTTGAGATCCTGCCAG
Seq C2 exon
GGCGTGAGTTCCGGGTGGTGGTACTGAGCTCTGTCCACAACCGCAATAGTCTGCTTAGCCCAGGGGCACCAACCTCAGAGTTCTTCACTGAGCCTCGAGTACTGAACACGGTCATGACTCGTGCCCAGTCTCAGCTGGTGGCTGTGGGAGATGCTGTGGCCCTCTGCTCCTCTGGAGCCTGCAGAAATCTCTGGAGAAGCTTCATCCGCGAGTGCATAGAACACCACAGCGCCTTCCCTGAGGAGCTGTCACTGGAACAGATTGAGCAGGGTGTGGCCCAGAGACAGAACTGGGCCTCATTGACACTCAAAGCTAGGGGCCCAGAGACAGAGCAAAAATCTATGGCCCAGGGCCCACAAAGGCTCATAGCTGAAGGGACCATGGTCACGGTGAAGGCAGAGACCAGAGCCGAGGCAGCAGCCAAGGCACAGACTGCGGCAGTCGCAGCAGAAGACACAGCAAGCGGGAACTCAGCCTCTAGAGATGCAGCAGCAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'12-14,'12-13,13-14
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(46.2=20.6),PF130861=AAA_11=WD(100=31.7),PF130871=AAA_12=PU(61.5=48.1)
A:
PF130871=AAA_12=FE(12.2=100)
C2:
PF130871=AAA_12=PD(25.4=4.2),PF0077314=RNB=WD(100=29.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACTCGGCTGAGGTCAC
R:
TATTGCGGTTGTGGACAGAGC
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types