MmuEX6107656 @ mm9
Exon Skipping
Gene
ENSMUSG00000027580 | BC006779
Description
cDNA sequence BC006779 [Source:MGI Symbol;Acc:MGI:2385169]
Coordinates
chr2:180966392-180971240:-
Coord C1 exon
chr2:180970457-180971240
Coord A exon
chr2:180970221-180970296
Coord C2 exon
chr2:180966392-180970076
Length
76 bp
Sequences
Splice sites
3' ss Seq
AACCCTGGACTTGTCTGCAGGTT
3' ss Score
6.71
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGCTGGAGTGTGAGGCCCTTATCCCACTCTCCTATGCCTTGTCACTAACCCGTGTAGTACTGGCAGGGGACCACATGCAGGTCACACCTAGGCTCTTCAGCGTGCCTAGGGACAAGTCAGCCAGGCACACGCTGCTGCACCGCCTCTTCCTGTACTACCAGCAGGAGGCACACAAGATCGCTCAGCAGAGTCGCATCATCTTCCATGAGAACTACCGGTCAACTGCAGCCATCATCAACTTCGTCTCCCATCATTTCTATTTAGCCAAGGGTAATCCCATCCAGGCCAGTGGCAAAGTCCCACGTCACCCCCAACACTACCCTCTCATGTTCTGCCATGTGGCAGGAAGCCCTGAGCAGGACATGTCCATGACATCCTGGCTTAACTCGGCTGAGGTCACCCAGGTGGTGGAGAAGGTGCGGGAGATCTATAACACCTGGCCTCACTGCTGGGGACCCCGGGAGCAGAGACACATCTGTGCTGTCTCTCATGGTGCCCAG
Seq A exon
GTTAGTGCGCTGAGACAGGAGCTAAGAAGGAGGAACCTTGGTGAGGTGTCTGTGGGCAGCTTTGAGATCCTGCCAG
Seq C2 exon
GGCGTGAGTTCCGGGTGGTGGTACTGAGCTCTGTCCACAACCGCAATAGTCTGCTTAGCCCAGGGGCACCAACCTCAGAGTTCTTCACTGAGCCTCGAGTACTGAACACGGTCATGACTCGTGCCCAGTCTCAGCTGGTGGCTGTGGGAGATGCTGTGGCCCTCTGCTCCTCTGGAGCCTGCAGAAATCTCTGGAGAAGCTTCATCCGCGAGTGCATAGAACACCACAGCGCCTTCCCTGAGGAGCTGTCACTGGAACAGATTGAGCAGGGTGTGGCCCAGAGACAGAACTGGGCCTCATTGACACTCAAAGCTAGGGGCCCAGAGACAGAGCAAAAATCTATGGCCCAGGGCCCACAAAGGCTCATAGCTGAAGGGACCATGGTCACGGTGAAGGCAGAGACCAGAGCCGAGGCAGCAGCCAAGGCACAGACTGCGGCAGTCGCAGCAGAAGACACAGCAAGCGGGAACTCAGCCTCTAGAGATGCAGCAGCAGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027580-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.000 C2=0.082
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(46.2=20.6),PF130861=AAA_11=WD(100=31.7),PF130871=AAA_12=PU(61.5=48.1)
A:
PF130871=AAA_12=FE(20.5=100)
C2:
PF130871=AAA_12=PD(42.6=4.2),PF0077314=RNB=WD(100=29.1),PF130861=AAA_11=PU(6.2=0.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTAACTCGGCTGAGGTCAC
R:
TATTGCGGTTGTGGACAGAGC
Band lengths:
169-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: