GgaEX1028411 @ galGal4
Exon Skipping
Gene
ENSGALG00000006138 | HELZ2
Description
helicase with zinc finger 2, transcriptional coactivator [Source:HGNC Symbol;Acc:HGNC:30021]
Coordinates
chr20:14265369-14271204:+
Coord C1 exon
chr20:14265369-14266152
Coord A exon
chr20:14266312-14266387
Coord C2 exon
chr20:14267691-14271204
Length
76 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTCTTCCTTACCAGGTT
3' ss Score
11.42
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
TGCTGGAATGTGAAGCTTTGATTCCGCTCTCCTATGCCACTTTTGAGACCCGGATTGTCCTCGCTGGGGACCACATGCAGATAACCCCAAAGCTGTTCTGTGTTGCGGATGGGCAGTCTGCATATCACACCCTGTTAAACAGACTCTTTCAGTTTTACCAGAAAGAGAAGCACGAAGTGGCCATGAAGAGCAGGATCATCTTCAATGAGAATTATCGTTCCACTGCAGGCATCATTGAGTTTGTCTCCAAGCACTTCTACATTGGCAAAGGCAATGCTATCCATGCCAGTGGGAACATTCCACCCCACCCTGAGATCTACCCGCTCATGTTCTGCCATGTTCCTGGTGTGGCCGAAAGGGATATGTCCATGATTTCTTGGCACAATGCTTCTGAGATAACACAAGTGGTTGAGAAAGTGGAGGAGATATATCAGAGGTGGCCACACGAGTGGGGTGCTCAAGATCAGAAGAGGATCTGTGTGGTCTCCCATGGGGTTCAG
Seq A exon
GTTTCTGCGATAAGACAGGAGCTGAGGAAGAAGCAGCTACCAGAGGTGGTGGTAGAAAACTATGAAAACTTGCCAG
Seq C2 exon
GCCGTGAGTTCCGGGTCATCATCATCAGCACAGTCCACACCAGTGAGAGCCTGCGCGTCTCGGCCTCCCACAACCATGAGTTCTTCAACGAGGCCAGAGTGCTCAACACCATCATGACGAGGGCTCAGTCACAGGTCATTGTGGTGGGGGATGCGGTGGCCTTGTGCTCCCATGGTCAGTGCAGCAAGGTGTGGAAGCGCTTCATCCAGGAGTGCATTGAGAAGGGGAGCATCTCCCCAGCAAACCTGACCATGGCCCAGATCAAACAGGCAGCATGCGACAAGGAGAGCTGGTGCAGGAGGAGCCCAGAGGGCAATGATGAGGACAGTGACACGGATTCCTGGAGCTCTGAGACTGAAAGCATGAATCCCGATGATCCCATCCTCCAGGAGCTCTTAGATGAGAGCAAGAACGTGCTGGTAACAGTGTCTGAAGAAGGGCTGCTCAATGTGAAGTCTGACACTTCAAACCAATGGGAAGACAGGCAGGAATACGTCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006138-'5-9,'5-6,6-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=0.052
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(67.5=49.2),PF130871=AAA_12=PU(61.3=47.7)
A:
PF130871=AAA_12=FE(12.3=100)
C2:
PF130871=AAA_12=PD(25.5=4.4),PF0077314=RNB=WD(100=30.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGATCTGTGTGGTCTCCCA
R:
CAATGACCTGTGACTGAGCCC
Band lengths:
172-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]