DreINT0078058 @ danRer10
Intron Retention
Gene
ENSDARG00000039452 | hk1
Description
hexokinase 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2848]
Coordinates
chr13:22845883-22846975:-
Coord C1 exon
chr13:22846792-22846975
Coord A exon
chr13:22846039-22846791
Coord C2 exon
chr13:22845883-22846038
Length
753 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
3' ss Seq
GTCTGTATTTCCACTTTAAGGTA
3' ss Score
9.29
Exon sequences
Seq C1 exon
GAACGGGCAGCAATGCCTGCTACATGGAGGAAATGCGAAACATCGAGACAGTAAGTGGAGAGGAGGGCAGGATGTGTGTGAATATGGAGTGGGGAGCATTTGGAGATAATGGCTGTCTGGATGACATCCGGACGAAGTATGACGATGCTGTGGATGACCTCTCCCTCAATGCCGGCAAACAAAA
Seq A exon
GTGAGCAGTTTTACTCAGTCATGGGTTGAGGAAAATTAAATGAAGCAGATGTAGCAGGTGCAAATGGTTTAATGTAAGGAAGCAAATCTTGTGATGAGGTTCTTACACTTTGTAGTGTTATGCACACAAAAGAGCTGGAATTGCTTATTGGTATATGTTTGTATTTTCAAGTGCATATTAATATAATTTTATGTGTATTTACACTCAAAAGGAGTCTGTAAGGTTTAAGAAATAATTGTGACAGTAGAAGTTACTAAAACTCAATTTCTAATCTGAAATAAATAATAACTTTACCAAGTTTGGGATAATATTTAATAATAAAATGCCTCTATACAAAAATATTAAGCAGCAAAACTGCTTTTCAGTTGTGATAATATTTGTTCATTTAGTATATAATATATAATGGTATTTATGCAGTTTTGTTAAAATCAGGGTTAATCCACATTGACAGCCTATTGTGTTGTGTAAAAATAAATGTAACGTAAACATGTCTTAAAACATGGCATATTTTTGTTATTTCGAACAAACCTCGTTGTAGACTAATGACATAATTTTTTATTTAAAATTTTTTTAATTCATCAAAACAAATGGAAATTTGGTGGTCTAAGCGGCATATTTTTTTTAATTTTCACGTCATTAACAAAACTTAACCAAAACCCAAACCCTTGAACGGCAGTGTACAATATATTTATGTAATATTTTGGCAGATTTGAGATCTTTAAATTAAATATTTGTCTGTATTTCCACTTTAAG
Seq C2 exon
GTATGAGAAGATGTGCAGTGGCATGTACCTGGGTGAGATTGTTCGAAACATCTTGATCGACTTGACGAAGCGAGGCTTCCTCTTCAGGGGACAGATCTCTGAAACACTGAAGACCAGAGGCATCTTCGAAACCAAGTTCCTGTCCCAAATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039452:ENSDART00000057638:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTACATGGAGGAAATGCGA
R:
TCAATTTGGGACAGGAACTTGGT
Band lengths:
320-1073
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]