MmuINT0077971 @ mm10
Intron Retention
Gene
ENSMUSG00000037012 | Hk1
Description
hexokinase 1 [Source:MGI Symbol;Acc:MGI:96103]
Coordinates
chr10:62274447-62275864:-
Coord C1 exon
chr10:62275681-62275864
Coord A exon
chr10:62274603-62275680
Coord C2 exon
chr10:62274447-62274602
Length
1078 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATC
5' ss Score
7.46
3' ss Seq
CTCCCTTCCTCTCCACTCAGGTT
3' ss Score
11.32
Exon sequences
Seq C1 exon
GGACTGGCAGCAATGCCTGCTACATGGAGGAGATGAAAAACGTGGAGATGGTGGAGGGGAACCAGGGCCAGATGTGCATCAATATGGAATGGGGTGCCTTTGGTGACAACGGCTGTCTGGACGACATCAGAACAGACTTCGACAAAGTGGTGGACGAATATTCTCTAAACAGTGGGAAACAAAG
Seq A exon
GTAATCAGCCTGTTGGGTGCCCGTGAGTGGGTTGGCTGGATTCTATGGCTGCACAGGGGCTTGGAAGCCCATCCCTTTGTTATAAGTGGGTTTTTGATTCCTGGTATGGGGTAGGATTATTCCTAGAAGTGACTGTGACAGTGGACATGCTGCCTAGTTTGCCCTTTGGGGACTGAAGGAGTTTAGCCATGCCTCAAAGGTCTCTTACCTTTGAGGACTTCAGTGGGTGAGGTAGACTCTCTTCTCACTACAAGATCCTGCGCCCCCTTGTGGCTGCTCAAAGTTTTGCAACTCAGGTCATGTTGGTTCTGAAAGAACAGTAGCCACTTAGCAATGAGGTGACCGTTCCAGTCTTCCAGTACGGTTCTTATTCATTGGCATAGCCTGGACGAGATGATCTGAGTTATGTCCTTTGGAAAATAAATTGGCTTCAGTTTAATCTTGAAAGTGTTGGGGCTCACCAGACTTGCCCCATGCTGTTAACCACAAAACCATCAAAAGCCAACCAACCAACCAACCAACCAACCAAAACCATCAATATATGAATACAAAAACCAAAGAACTTTCTCTCTGTCCATTTAAGACTCCACTGAGATATTTTTTGCTTAGTCTGGAACTGCTGAGGGCGTTGTACTGTGCTGGGCTGGGGTCTAGGCAAGGCACTCGTTCCCCGTCTTCTCAGGACCAGGAGTCACTGTGGTGGTGGCAAGAGAGAGAGAGAGAGAAGGGAGCCTTGTGTGTGCTCTGTAGAAGGGTGAGGTGAGAGAGAGCCTGGGCCTGGAAGAGTGACAGTCTGGGGTGACCCTCTCTGGGGTGTGGCTCATGGCTGAGAGCGGAGTGGAATGGACCAGGCAAAGACAACCAACGAGGCCACCTAGCACGGCTTTCTGTGACTGCAGGGGGCATCAGTGTGGGGAGGGTAGAGGGCTTCTTAGCCCCTGTCAGCATGCTCGGGGAGGCACAGGACAGGTATGTGACCGAGATCATACCCTTGGCTGGCCGTCATAGGTCCGGAGTGGCTGTTGGTCCCAGGGCGAGTGGTCCTTCTGCTCAGTGCCCTCCCTTCCTCTCCACTCAG
Seq C2 exon
GTTTGAGAAGATGATCAGTGGAATGTACCTGGGTGAGATCGTCCGTAACATCCTGATTGACTTCACCAAGAAAGGCTTCCTCTTCCGGGGACAGATCTCTGAGCCACTCAAGACCCGAGGCATCTTCGAGACCAAGTTTCTCTCTCAGATCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037012:ENSMUST00000116238:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACATGGAGGAGATGAAAAACG
R:
TCGATCTGAGAGAGAAACTTGGTCT
Band lengths:
319-1397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types