DreINT0078092 @ danRer10
Intron Retention
Gene
ENSDARG00000038703 | hkdc1
Description
hexokinase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-9801]
Coordinates
chr13:22889467-22890672:-
Coord C1 exon
chr13:22890489-22890672
Coord A exon
chr13:22889623-22890488
Coord C2 exon
chr13:22889467-22889622
Length
866 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
TGCTACTCTTTCCTTTTCAGGTT
3' ss Score
12.87
Exon sequences
Seq C1 exon
GAACAGGAAGCAATGTGTGTTACATGGAGGAGATGAAGAACATTGAGATTGTTGAGGGTGATGAAGGACAGATGTGTGTAAACACTGAGTGGGGAGGTTTTGGAGAAAATGATAATATTGAGGACATCCGGACCAGATATGACAGAGAGGTCGACAGCGGCTCACTCAATGCTGGGAAACAAAG
Seq A exon
GTAAATATTACAATGTTTCGATAGTTTTATTATAACATTTTTAATATTATGTATTTATACTGTATAGTTTATATAGTTTTATTTTTTTATGGTTATCTACACAATTGTGCAAGGTAAATGCAATGCAAGGTTTCTGCGTTTGTCCACATGGAGGCAGCATACTATAATGATTCCCTTAAAACATAGGAATGGTGTTAGCAACCTGTTGTAATACACAAAAAAAAATGTCTTTAAATAGCAAAAAATATATATAATTTTTATTTGACGCTTTTTTTTTTGTTTTTTGCTACTAAATACAAATGTAATTTTACTATTGTTGTTATTAAATATTTAATCAATTAAAATATACTAAACATTAAAATATACAATATATACTATAATTCACTCATTTATTTTCTTTTCGGCTTAGTCCTTTTATTTATCTGGGGTCGCCAGAGCAGAATGAACCGACAACTTATCCAGCATATGAAATTAAGCAAGTTTACACAGTGGATGTCCTTCCAGCCGCAACCCAACACTGGGAAACATTCACACACAAACACTAAAGACAATTTGGCCTACACAATTCAACTATAGCGCATGTCTTTGAACTGTGGGGGAAACCGAAGCACCCGGAGGAAACCCACGCAAACACGGGGAGAACATGCAAACTCCACATAGAAATGCTAACTGACCCATTTGAGGCTCGAACCAGCGAACTTTTTGCTGTGAGGTGATCGTGCTACCCACTGCACCATGACACCATATATACTATAATATTATATCAAATTAAATGAAAATAAAATACACAAAATCATTATTTAGGCCCTAATAACTGTGTTGAAGTTTTTCAAAAATAATCCATTGTGCTACTCTTTCCTTTTCAG
Seq C2 exon
GTTTGAAAAAATGACCAGTGGCATGTATTTAGGAGAGATTGTAAGGCAGATCCTTATTGATCTCACAAAGCGTGGTTTTCTGTTTCGCGGTCGCATCACAGAGAGACTGAAGACCAAGGGAATCTTTGAAACCAAGTTTCTTTCACAGATTGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038703:ENSDART00000056523:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGAAGCAATGTGTGTTACA
R:
TCTCAATCTGTGAAAGAAACTTGGT
Band lengths:
337-1203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]