RnoINT0070966 @ rn6
Intron Retention
Gene
ENSRNOG00000006116 | Hk2
Description
hexokinase 2 [Source:RGD Symbol;Acc:2797]
Coordinates
chr4:113563970-113565408:-
Coord C1 exon
chr4:113565225-113565408
Coord A exon
chr4:113564126-113565224
Coord C2 exon
chr4:113563970-113564125
Length
1099 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
TGGACAACGTCCCGTTGCAGGTT
3' ss Score
6.15
Exon sequences
Seq C1 exon
GCACCGGAAGCAACGCCTGCTACATGGAAGAGATGCGTAATGTGGAGCTGGTGGACGGAGAGGAGGGACGGATGTGTGTCAACATGGAGTGGGGAGCATTTGGGGACAATGGCTGCCTGGATGACTTGCGGACCGTGTTTGATGTTGCTGTGGATGAGCTTTCTCTCAACCCTGGCAAACAGAG
Seq A exon
GTAAGCAATCACCTGTGTTGGGAGCTAAGTCCCAGAACAGGGCCTCAACTGACCGGGCTCTCCATCTTCACGGTTTTCCTCAGAATGCCCGTTCTCCTGAGGAGACTGGTGGGGCTCTCCTTCAAAGAGGGTCTTCTTTCTCAAACATACTACAAGGTCTTGAGAGTGCGTTAGAAACTAGGTCTGAGACTGAGGAAAACCAGGTGGGAACTTGGCAACACAGACAGAAAGACAGACAGGCAGCTCCCAGTGTGAAGAAGCACTGTTGTGGCTCTGACAGGAAGGCAGGTTACTTAGCATCTGTCACCTCTCTTATGAAATGACAAGCATCCCCAATGTCGCAGAGCCTCATGTAGTGTAGGGGCTTGGAGCTGATCTGAGACCTCTTCCTGGTAGGAAGATGCTATCTCTACAGTGTCTGAATCAGTAGTCAAAGACCAAAGACCATGGTCCTTTAGAGCACACTTTACAGTCTATGATTAGTCTAGATTAGAGAAGACCCCAGATTGAAATCCCTCTTCGAGCCAGGCAGGTAGCATTAATGAAGGAAGAAGCAGGCTACAAAAGGAGGTAGGACAATGACAATGTCTTCAGTGCACCGTGGGGGCCTTGGCTTTGCAAAGAGGCATTGTGCATATTCCAAAGACCAGTCATGTCAGCGTCATGGTTGGTTCCAGAAGTGGCGGGGGGGGGGGGTGTCCTGCTGTTGTTGCCAGCAGTTACTTAAGGCCCAAGAGAAAACATGGAAGCCGTCCAGTGGAATTTAGGGTGAAGACTGACTCAGCTATTCTTCCTTGTTCCTGGAATTGGTCTTGGGTGTATGGTCCTTCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCCAAGCCTTGTGGGCCTCAGATGTCAGGTGGTGAGTTTTGCTCAACATTTGAGAAGATTCTTGGATGTCGCCCGAGTGACACCATGTTCCTTCCTCTCTGCCCCCACAAGAGGAGTTTTTCCACCCTCCCTTTTTTTCTGGTCTGGACTCATCTGCCCCCTTCTGACCTCTGTGGACAACGTCCCGTTGCAG
Seq C2 exon
GTTCGAGAAGATGATCAGCGGCATGTACTTGGGAGAGATTGTGCGCAACATTCTCATCGATTTCACGAAGCGGGGGCTGCTCTTCCGAGGCCGCATCTCAGAGCGCCTCAAGACAAGGGGAATCTTTGAAACTAAGTTCCTGTCTCAGATAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006116:ENSRNOT00000008813:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0372711=Hexokinase_2=FE(25.4=100)
A:
NA
C2:
PF0372711=Hexokinase_2=FE(21.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCGGAAGCAACGCCTG
R:
TCTCTATCTGAGACAGGAACTTAGT
Band lengths:
338-1437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]