DreINT0081760 @ danRer10
Intron Retention
Gene
ENSDARG00000103926 | inpp5e
Description
inositol polyphosphate-5-phosphatase [Source:ZFIN;Acc:ZDB-GENE-050809-23]
Coordinates
chr5:64383183-64383541:-
Coord C1 exon
chr5:64383422-64383541
Coord A exon
chr5:64383291-64383421
Coord C2 exon
chr5:64383183-64383290
Length
131 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TGACTTTGTGTTTGTTTCAGCTG
3' ss Score
10.66
Exon sequences
Seq C1 exon
AGGTGGAACATGCTACAGTCACAACCAGAATTATATCTCAGATTAAGACTAAAGGAGCAGTGGGCATCGGCTTCACCTTCTTCGGGACGTCCTTCCTCTTTGTCACTTCCCATTTCACCT
Seq A exon
GTAAGTAGAATATCTCAGAAATTTAAACAAGGGTTCAACAACCCCAGTTACATGTTACAAAGTCACGATGGCGTTAAATGTATGCTCGATTAAAAATAAATCCAACCAAACTGACTTTGTGTTTGTTTCAG
Seq C2 exon
CTGGAGATTCCAAAGTATATGAGAGGATCTTGGACTATAACAAGATCATCGAAGCTTTGGCTCTTCCTAGAAACCTTCCTGATACAAACCCTTACCGCTCTACGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103926:ENSDART00000162511:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.2=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGAACATGCTACAGTCAC
R:
GTCGTAGAGCGGTAAGGGTTTG
Band lengths:
226-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]