MmuINT0082297 @ mm9
Intron Retention
Gene
ENSMUSG00000026925 | Inpp5e
Description
inositol polyphosphate-5-phosphatase E [Source:MGI Symbol;Acc:MGI:1927753]
Coordinates
chr2:26255556-26256012:-
Coord C1 exon
chr2:26255893-26256012
Coord A exon
chr2:26255664-26255892
Coord C2 exon
chr2:26255556-26255663
Length
229 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATTCTGGTTTTGTCCCGTAGCTG
3' ss Score
7.95
Exon sequences
Seq C1 exon
AGGTCGAGTACTCCACAGTAACTACACGCATCGTGTCTCAGATCAAGACCAAGGGGGCCCTGGGCGTCAGCTTCACCTTTTTTGGCACCTCCTTCCTCTTCATCACATCTCACTTCACCT
Seq A exon
GTAAGTGTTTGCAAGCCTTGTATAGTCCTGAAACTGGTTTGTGAGTCTCTGTCCAGGTGGGGTGCCAGTTGCTCTGCGCTAGTAGTGGTGGGTAGAGTCTGATACTCAGAACATTCACTGTTGTCAACCACAGCCCTGAGGCAGAGCCCCACAGCAGACAACTGGGTAGTATTTGGGGACAGTCAGGGTATGGGGCAGCTCAAGTGTCTATTCTGGTTTTGTCCCGTAG
Seq C2 exon
CTGGAGATGGGAAGGTAGCAGAGCGGCTACTGGACTACAGCAGAACCATCCAAGCCCTAGCCCTGCCCCGGAATGTGCCAGACACAAATCCCTACCGCTCTAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026925-Inpp5e:NM_033134:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.2=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCGAGTACTCCACAGTAACT
R:
CTGCACTAGAGCGGTAGGGAT
Band lengths:
228-457
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: