HsaINT0080998 @ hg19
Intron Retention
Gene
ENSG00000148384 | INPP5E
Description
inositol polyphosphate-5-phosphatase, 72 kDa [Source:HGNC Symbol;Acc:21474]
Coordinates
chr9:139326931-139327527:-
Coord C1 exon
chr9:139327408-139327527
Coord A exon
chr9:139327039-139327407
Coord C2 exon
chr9:139326931-139327038
Length
369 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
CCCCATTTCTGTTCCCACAGCAG
3' ss Score
8.23
Exon sequences
Seq C1 exon
AGGTGGAGTGCTCCACGGTGACCACACGCATCGTGTCTCAGATCAAGACCAAGGGGGCCTTGGGCATCAGCTTCACCTTTTTTGGCACTTCCTTCCTCTTCATCACGTCCCACTTCACCT
Seq A exon
GTAAGTTGCTTGGTGCCCGCACCGCAGGTGCTGTGTGAGAACAGCTTCCTCTCCTGACCGGGACCCTGTCCAAGGCAGGGGTCCTGACCGCTGGCTTCATCTTCCACCCAGGGCCGTGGGGTGGGCACCACGCTTGCTAAGATGCACGCCAAGGACCCCCGGCAGACCCCGGCACCGAGGGCGTGCCGTGCTGGGCCCGTGCTCTGTCCTCCGAGGCGGAAATGTCACTGGCTGGGCCCGGCAGCGGATGCCCGGTGGGGTTGCGTCTGCCGGGGGTGCGCAGTCAGGGCACAGTCCAGAGGTGCGGCGCTTTAGGGAGACTCGAGCATCCGGAACCCTGTGGTCCCTACCCCATTTCTGTTCCCACAG
Seq C2 exon
CAGGTGACGGGAAGGTGGCGGAGCGGCTGCTGGACTACACCAGGACTGTACAAGCCCTGGTCCTGCCCAGAAATGTGCCCGACACCAACCCCTATCGCTCCAGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148384-INPP5E:NM_019892:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0337218=Exo_endo_phos=FE(14.2=100)
A:
NA
C2:
PF0337218=Exo_endo_phos=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCCACGGTGACCA
R:
CTGGAGCGATAGGGGTTGGT
Band lengths:
218-587
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)