DreINT0082982 @ danRer10
Intron Retention
Gene
ENSDARG00000012824 | itga3b
Description
integrin, alpha 3b [Source:ZFIN;Acc:ZDB-GENE-050411-55]
Coordinates
chr12:5552390-5556342:-
Coord C1 exon
chr12:5556195-5556342
Coord A exon
chr12:5552744-5556194
Coord C2 exon
chr12:5552390-5552743
Length
3451 bp
Sequences
Splice sites
5' ss Seq
TCGGTAAAG
5' ss Score
6.18
3' ss Seq
TGTCTGTGTGTCTGGAGCAGTGT
3' ss Score
5.69
Exon sequences
Seq C1 exon
TGCGGTTTCTTCAGACGGGCCAGCAGGAGAGAGATGTATGAGGCCAAATCCCAGAAAGCAGAAATAAAGATCCAGCCCTCTGAGACAGAGAGGCTGACGGAGGAGTTCTGAGCCTGCATGCAGGGCTCCACCATTATAGGGCCCTTCG
Seq A exon
GTAAAGCAGACCCAAGAGCTCTACTTAGTCAACATAACGCCTTTTCTGACTTTTCACTCCACAAGCCTGTTTCTTAAAATAACTCTCTAATCCCTTCACTGTCCAATAACAGTGTATTCTTTCCTCATTCTGTCTGTCTTGCTCAATATCTTAACCCCATTCCTTGAAAAAACTGAAATCTCTATTAACATTTTTACAATACTCACAATTTAATCTTGAATATGTACAATTGAAAATTATTAGCCCTCATATATATATATATATATATTGTTTTATTTCGGCTAGAATAAAAACAGTTTTTAATTTTTTAAAAACCATTTTAAGGTCAATATTATTAGCCACTTAACCAATCTATAATTTCGATTGTCTCCAGAACAAACCATCATTCTACTTGACATGACTTGCCTAATTAACCTAGTTAGGCCTTTACATGTCACTTTAAGCTGAATACTAGAATCTTGAAAAATGTCTAGTAAAATATGATGTACTGTCATCATGGTAAAGATAAATGAAATCAGTTATTAGAAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTCAGAACTATTAGCCCTCCTGTATATTTTTTCCCCAATTTCTGTTTAACGGAGAGAAGATATTTTCAAGTTCTAGTATAACAATGGTTTGTTCTGTTGACTGTCAAAACATATACATAGTTAAAAGGAGCTAATAATTTTGTCCTTTAAATAGTGTTTAAAAAATTAAAAAACTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGACATCATTTAAACATCATTTGGGAAATATTTTTAAAAAAATTCAAAGAGGGCTAATAATTCTGACTTTAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTATGTATGTATGTATGTATGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATAGTCAGAACTATTAGCCCTCCTGTATATTTTTTCCCCAATTTCTGTTTAACGGAGAGAAGATATTTTCAAGTTCTAGTATAACAATGGTTTGTTCTGTTGACTGTCAAAACATATACATAGTTAAAAGGAGCTAATAATTTTGTCCTTTAAATAGTGTTTAAAAAATTAAAAAACTGCTTTTATTCTAGCCGAAATAAAACAAATAAGACTTTCTCCAGACATCATTTAAACATCATTTGGGAAATATTTTTAAAAAAATTCAAAGAGGGCTAATAATTCTGACTTTAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGTGTGTATGTATGTATGTATGTATGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATACGCATGATCTGTATATTTTGTTTGTTTATTGAAAGGAATAGTTCACCCAGAATGAAACCCCTGCCATAAGAACCTTTTTTGGTTGCCAAAAAAAAAGTTCTTCAAAGAAGCAGTTTTGATAGTGGGAAGAACGTATCTAAAGAATCTTTTTCCACTATGAAGAACAGTTTTTTGCTCTAAAAAGTTTGCATAGTAAATTGGTGTTAAACTTTCTTCATGGGACCATCAATACCAATAAAGAAAATTTATTTCTTAAAAGGGAACATCATGCCATTCCAAGCCCATCAGACACACCAACACAATCTCACAGCAATTAGTAACTTTTTGATTTAGTGGCTAATTCGTATAATCTCATTCGTACGATTTAGTATGATTTGCTCATCCCCCAATGACGGTTGGGTTTAGGGACAGGGCTGGGTGCCACGCCTCCTTTTTAAAATCGTAGATTTTCTTATGACTACTCGTACAAATTCGTTTGAGTTAGCCACTAAACAGACACAACGTAAAATCCTTACATTTTCTCATGAGATGAGGCTGGATACACAGTAAGGGTAATTTCAAAACACAAATTAATATATTTTTATTGAAATATCAAAGCTTTCTGTACCTCCTTTGACAGTCCAAGTAACCGAAAAAAAAAGACTTTTGATTTTTAATATTTGATTTCAGATATAATTCAGATGTAATTCAGAGTTGTCATATTTGGGTGAATTATACTTTTAAAAGTGTATTCAAAGCCAATGTTTTTTGGTCATTTACTTAGCATTTTGTTTTTTTTCTGTGAAAAACAATGAGGTTTTATAGTTTGGAAGCTTTTTAATAAGAGTAATATGAACTTTTAAACAAAAATCATTCAGAATTAGGGCTGAACAATATATTCTTCAATATATCGAGAATCGATATCACAATGTGTTTATCTGCAATTGTCACATCGCATGATTAGATTGTTTATTAAAGATTAATAGATGAAGAGAATTTTAAATATCACAATGGCCATAGTATTTAAGTCCAGAAATTGAAAAATCAAAAGTAAAATAACTTTACACTTCCTAGAAAACACTTTTATTTTTGCTCTGTCATATTTATATATGCTTGTAATTTATTATATTTTATGCTGATGCACTGCACAGAAAAAGACTTGATCATCCCAGTTGATCTAAATTCATAAAATATTTTCAAATTGAGCTTTCCAAATCAACCAGTTGAAATTATATTTATATTGCAATAATTACTGCAGCAAAATAAAATTTTGCAATGTCAGATTTTTTCAGTACCGTGCAGCCCTGCTCAGAATTATGAGTTTGACTCATAGTTTTGACTTTTTCCTTCAAAATTTTGTAAAAATTAAAGTAAATTTTGTAAAAATAAAGAGTTTTTTATCTTTTGTTTTCAAGTTAAAATCAGTTAAACTTTTTTTTGTGTAAGAAAAATATCAGATTTGTGAGATAAACAGTTTCATTTTTTATTCTGTGGTTTAAGCTTCTGTAAATTAGGCTTGCATTCACTATGCAAACTAGTCATACAAAGCAAATGAGAAATGAAGCTGAATAACAAATTAATACACTTAAAACGTTTTTTTTTTTTGTTTTTTTTACCAAACACACTCATCAAATGGCTTCAAACGACTTGAAATAGGATTTTGTGCATCTTTTTTGAAGCTTGGCTAAAATCACTGTGCATTTTAAATGTAAAACATCATTGTTGTCACAGAAAAGAGAGAATAAAAGATTAAATTAGTTAAAAATCCAAATTCATTTCAAGGCAGATCCATCAACTCTTAACTTGAAGTCTCCCTCTCATTGTCTGTGTGTCTGGAGCAG
Seq C2 exon
TGTGGTTTCTTCAAGAGGGCTGTTTACTACAGGATCATGCCAAAGTACCAAGGTGTGAAAGTCCGCAAAGAGGAACGCTACAACCTGGCCTTCCAGCCCGAGCAAGACCTCAGCAAGAAACTCTGGGTGACCAACTGGACAGAAATGCATGAATTTTACTACTGACGTCTTCACTCTCTCCATCCATCCAGAGCCAGGAGGAGCGTGATGATTGGACGATGTGATTTATTAACCCCGCCTCCACTCGAAGGACACTGGACATCGCCGTTGCTCAAACACAGTGAGAACAAGTTTGGAAGCGTTTGTTGGTCTGTGTGCAATAGAGTTGTAGACCATTAAACTGCTTTCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012824:ENSDART00000105884:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF066977=DUF1191=PD(24.2=81.1)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]