HsaINT0082433 @ hg38
Intron Retention
Gene
ENSG00000005884 | ITGA3
Description
integrin subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:6139]
Coordinates
chr17:50088225-50090480:+
Coord C1 exon
chr17:50088225-50088366
Coord A exon
chr17:50088367-50089109
Coord C2 exon
chr17:50089110-50090480
Length
743 bp
Sequences
Splice sites
5' ss Seq
TGGGTAACA
5' ss Score
3.35
3' ss Seq
TCTTCTCCCTCCAACTCCAGTGT
3' ss Score
8.4
Exon sequences
Seq C1 exon
TGCGGCTTCTTCAAGCGAGCCCGCACTCGCGCCCTGTATGAAGCTAAGAGGCAGAAGGCGGAGATGAAGAGCCAGCCGTCAGAGACAGAGAGGCTGACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCCGGCCCACCTGG
Seq A exon
GTAACACGGCCTCCGGGCCCCCTTCCCCGAGCCCCACAGCTGGCCGGGCCTCTGACTCTGTCCTATCTGCTCCTCTTCCCTTATGGGCCTGCTCTGACCTCATTCTGTCCCCACCACCACCCCAAAGATCAGGTCACTCTGACTGTCCCTCCAGCCCCCTGGGTGTCTGGCTTTCATCAGCCTCCCCCTAAGCCCCTTGGTGACTTGGGACCCCATGAGGGAGGCATAAATCCTCTCTGTGATGACCTTGCTTTCTGGGGATTGGAACAAGGTCAAGGGCAAGGCCAGGCCCCATCTCTGTAAACCACAGCCATGTCCAGAATAATTCTACACTCCCATTTCCACCCCTAGGGAAGGAGGGGAGCAGTAGAGACCCTCCTCCTGGGAACTAGCCTGTTTCCTCCTGAGCAACCCTTCCAGGATAACAAATGGACCCATTCCCAACATTGTGGTCAGGGTAGACTGCCCAGTCTTCCTGGCCATTCCATCCACTGTCTCTGCAGCTGCCCTCGGTCTCCATCTGCCTCTTCCTCTGCTCTCTGCCTTCCTCAACTCCTTCTTCCTCTGGGGCCTGGGGTGGAGAAACTCATCCTCCGTATCTCAGTGCAGAGAGATGGGATGCGTTTCGGTCAAGAGTTCTGGCTTTGAGGAGTTCTGGGTGGGAGAGGGAGAGGCCTGGCACTCCTTCCTGGTGGCTCAAACTCTGGATGCTAATGTTCTTTCTCTTCTCCCTCCAACTCCAG
Seq C2 exon
TGTGACTTCTTTAAGCGGACCCGCTATTATCAGATCATGCCCAAGTACCACGCAGTGCGGATCCGGGAGGAGGAGCGCTACCCACCTCCAGGGAGCACCCTGCCCACCAAGAAGCACTGGGTGACCAGCTGGCAGACTCGGGACCAATACTACTGACGTCCTCCCTGATCCCACCCCCTCCTCCCCCAGTGTCCCCTTTCTTCCTATTTATCATAAGTTATGCCTCTGACAGTCCACAGGGGCCACCACCTTTGGCTGGTAGCAGCAGGCTCAGGCACATACACCTCGTCAAGAGCATGCACATGCTGTCTGGCCCTGGGGATCTTCCCACAGGAGGGCCAGCGCTGTGGACCTTACAACGCCGAGTGCACTGCATTCCTGTGCCCTAGATGCACGTGGGGCCCACTGCTCGTGGACTGTGCTGGTGCATCACGGATGGTGCATGGGCTCGCCGTGTCTCAGCCTCTGCCAGCGCCAAAACAAGCCAAAGAGCCTCCCACCAGAGCCGGGAGGAAAAGGCCCCTGCAATGTGGTGACACCTCCCCCTTTCACACTGGATCCATCTTGAGCCACAGTCACTGGATTGACTTTGCTGTCAAAACTACTGACAGGGAGCAGCCCCCGGGCCGCTGGCTGGTGGGCCCCCAATGACACCCATGCCAGAGAGGTGGGGATCCTGCCTAAGGTTGTCTACGGGGGCACTTGGAGGACCTGGCGTGCTCAGACCCAACAGCAAAGGAACTAGAAAGAAGGACCCAGAACGGCTTGCTTTCCTGCATCTCTGTGAAGCCTCTCTCCTTGGCCACAGACTGAACTCGCAGGGAATGCAGCAGGAAGGAACAAAGACAGGCAAACGGCAACGTAGCCTGGGCTCACTGTGCTGGGGCACGGCGGGATCCTCCACAGAGAGGAGGGGACCAATTCTGGACAGACAGATGTTGGGAGGATACAGAGGAGATGCCACTTCTCACTCACCACTACCAGCCAGCCTCAGAAGGCCCCAGAGAGACCCTGCAAGACCACGGAGGGAGCGACACTTGAATGTAGAATAGGCAGGGGGCCCTGCCCCACCCCATCCAGCCAGACCCCACGCTGACCATGCGTCAGGGGCCTAGAGGTGGAGTTCTTAGCTATCCTTGGCTTTCAGAGCCAGCCTGGCTCTGCCCCCTCCCCCATGGGCTGTGTCCTAAGGCCCATTTGAGAAGCTGAGGCTAGTTCCAGAAAACCTCTCCTGACCCCTGCCTGTTGGCAGGCCCACTCCCCAGCCCCAGCCCCTTCCATGGTACTGTAGCAGGGGAATTCCCTCCCCCTCCTTGTGCCTTCTTTGTATATAGGCTTCTCACGGCGACCAATAAACAGCTCCCAGTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005884:ENST00000320031:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACCGACGACTACTGAGGG
R:
ATGTGCATGCTCTTGACGAGG
Band lengths:
353-1096
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development