RnoINT0075982 @ rn6
Intron Retention
Gene
ENSRNOG00000004276 | Itga3
Description
integrin subunit alpha 3 [Source:RGD Symbol;Acc:1310333]
Coordinates
chr10:82855613-82857925:-
Coord C1 exon
chr10:82857785-82857925
Coord A exon
chr10:82857135-82857784
Coord C2 exon
chr10:82855613-82857134
Length
650 bp
Sequences
Splice sites
5' ss Seq
CGGGTAACG
5' ss Score
6.95
3' ss Seq
CTCTTCTGCCTAAACTCCAGTGT
3' ss Score
4.7
Exon sequences
Seq C1 exon
TGCGGCTTCTTCAAGCGAGCCCGCACTCGTGCCCTGTATGAAGCTAAGAGACAGAAGGCTGAGATGAGGAGCCAGCCATCAGAGACAGAAAGGCTGACCGACGACTACTGAGGGGGCAGCCCCCCGCCCCGGCCCACCCGG
Seq A exon
GTAACGGCCTATGAACCCTCTCCAAATCCCCAGCTGGCTGGGGTCTCTAATTCTGTCCTGTCTACTCCTCTTGCCTTGGGGGTCTGCTTGAATCTCACTTGTCTACTACCTCAAAGTGCAGGCCATTCTGGCTGCCCCTGGTGCCCCCACCTCCACCTGGCCACGTGCCGGGAAATCCTTTAATGAGCATGCTGCTTTCTGGAAGACCGAAAAAGAGAAATAGTCAGGACTAGATCCTGTCTCTCTGATCACCAGGCATGTCCACAGTAACTCTAAGTCCTCTCTCCTCCCACAAGGAAGGAGGAAACCAAGAGAGGCCCATCTCTTTTGTCTTGAGTCCCACCATCTCCCTAGGATAACCAACCGTTTTACCCACCTCCAGTCCTGTCCATTGAGACCACCCCATCTTCCTACCTCACAATCTCTGCAGCCGCTTAGTCTCCACCTGCCTCTGCTCTCCTCTGTCTTCCTCAGCCCCTCCTTCCTGTGGGCCTGGGGTGGGGATGTTCATCTGCCAGTCTCATACTGAAGACCTTCGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGCACGCACGCATCTTCTCCTGGTTGAATTCTGGATACTGACACAATTTCTCTTCTGCCTAAACTCCAG
Seq C2 exon
TGTGACTTCTTTAAGCCAACCCGCTACTACCGGATTATGCCCAAGTACCACGCAGTGCGTATCCGGGAGGAAGACCGCTACCCACCTCCAGGGAGCACACTACCCACCAAGAAGCACTGGGTCACTAGCTGGCAGATTCGGGACCGATACTACTGATTGCCCTCCCCAACAAACCACCCAGCACCCCCTTCCTTCCTATTTATCATAAATTATGACTCCGACAGTCCAAAAGGGGCCACGAGTGTGGCTGGCACTGGCAGGCTCAGGCATCTATCCCCCTCTTCAGTGCAGGCATGTTTTCTGGGGTCGTGGAATCTCCTTCAAGACCTTGAAATGCTGAGCACAGCATGGCCCTGCATACTGGCCACACACAGAACTACTAGTGGCCTGTTCTGATACACCCTGGTGGGTGCCATGTCCAAGTCTCTGTGCCAAAACCAAGCCAAAGCGCCTCCACCGGGAGACAGGAGGAAAAGGTCCCTGATGTGGTAACACCTCTCCTCCACACTGGATCCCCCTTGAGCCACTGTCACTGGGCAGAGTTTACTGTCCAGAATAAAACTACTGACAAGGAGGAGACAGTCAGGCCCAGCCGCAATTCCTGGCAGGCACTGGAGCACAGGGCCACACTAAAGGCTACCCAGGGGATGTTCTTATGACCTGTGTGCTCAGACCCAAGAGCAGTGAACTAGAAAACAGGTCCCCGGAATGGGTTTTATGAGTGGCTCTCTAAAATTGTGGCTACAGAGAGAGTTGGCAAGAAATGCAGCCCCAAGGGACAAAGAGAAACCGTGGGCAGCCTGGACACACTATGCTGGGACTGACCTGGAGCACGGTGACATCCTTCAGAGAGTGGAGTCCTGGCACAGCCGACACTAGTAGGACGAAGAGGAGAGACTTCTGACCCATCCTGACCACCTCAGCCTGGGCAAGGCCTGGAGTTCCCCACAAGGCCATGTGGGGTGTGATACTTGAATGTAGGGCAGAGGGGGGCCCAGCCCCTGCCCCAGTTGGCCAGACTTGATTCTGCTCCCTTGACCACAGAGATATATTCTGAGCTGCCTGTGGCTTTCTGAGAAACCTGGCCCTCCCCCTCCCCGTCCCCTAGGAGCTGCATCCCCATTCCAGCAGTGGAGGCCAATCTCTCAGGACCTCTCCCCATCCCTGCCCACAGGCAGGCCCACTCCCCAGCTCTGTCCCCTCCACCCCATGGTACTATAACAGCTTCCTCCATCCTGTGCCTTCTTTGTATATGGGCGTCTCACTAAAATAAATAAACAGTCCCCAGTTTGTACCTCTGCGTCTGCTCCTACCCGCCCCCATCCCTCCCCCTACCCGCTTCCTGACCAATCTCAGTCCAGTCCAGAGGGGTGAGACCCAAGCTGGTCTCTTGATGATGAATCTAGCACCCTACGGCAAGCCACACATGGGAGATTTTGATTCAAGCACTGAGCTCACGGAAATCCAGTTTTAGGGAGAGCGCCATGGAGGAGTGCTTTCTTTACCTGTCAGAGCGGTGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004276:ENSRNOT00000005644:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGGCTGACCGACGACTA
R:
CCTGCACTGAAGAGGGGGATA
Band lengths:
347-997
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]