DreINT0083738 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21290071-21290499:+
Coord C1 exon
chr8:21290071-21290191
Coord A exon
chr8:21290192-21290317
Coord C2 exon
chr8:21290318-21290499
Length
126 bp
Sequences
Splice sites
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
3' ss Seq
TTTTCTGACTGTCCACAAAGCCA
3' ss Score
3.96
Exon sequences
Seq C1 exon
GCTCATCACACCACTGTAAAGCAGCTGCTGCAGTCCACCATGCGTCTGTTAGACTGTCCATGGCTACAGCCACAGCAAAAAGTCCAAGTGGAGTCCTGCATCCGAACACTAGCAGTGACAA
Seq A exon
GTAGGTCATCCTAATAGATAAAGAGGAAAAATGAGGATTAATGTGTCTTTATCAGTTTTCATGGACATAAAAGATTTCTGCTGCATGACCAAATTTATTTTTTTTTTTTTCTGACTGTCCACAAAG
Seq C2 exon
CCAAGAGTCGCTCTATTCCTCTGCCAGTGGAGTTGGAGGCTCATGTCAACATGATGTTGAGTCACAGTAATTCCCTCACATTGTCCCGATCCAGTCACTCCAACAAAAGCATGTCACGCTTAACACGGCCTGCCGCTCCCACCAACCCCTGGGACTACAAGAACATCATTGAAAAACTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCCACCATGCGTCTGTTA
R:
CTTGTAGTCCCAGGGGTTGGT
Band lengths:
252-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]