RnoINT0076754 @ rn6
Intron Retention
Gene
ENSRNOG00000052795 | Itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:RGD Symbol;Acc:2934]
Coordinates
chr20:5699918-5700521:+
Coord C1 exon
chr20:5699918-5700038
Coord A exon
chr20:5700039-5700330
Coord C2 exon
chr20:5700331-5700521
Length
292 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AGCGCTGCCCTCTCTTGCAGCCA
3' ss Score
10.23
Exon sequences
Seq C1 exon
ACGCATCAGACAATTGTGGTTCAGCTGCTGCAGTCCACCACCCGGCTGCTCGAGTGTCCTTGGCTGCAGCAGCAGCACAAGGGCTCGGTGGAGGCCTGTGTCCGCACCCTCGCCATGGTGG
Seq A exon
GTGAGTAACCCTGCTGGACTCACCCAGCGCCACCAGCAGGGAGCACCAGTCCCGTAACTACTGCCTTATCCGGAGTCCGAGTGTCTCTCGGGGTTGTCTGTCCTTCCTGGTGTCTGCCTAGCAAGTAGTTACATTTCCTTTTGCTGACTGCACCTGATCAGGCAGGAGGGGGTGCTGGGTTCCCTGTGTGCCCAACAGGGGCTCGGGCAGCGCTCAACCCCGTCCCCATTGGTCTGCCTGCCTCTTCCCCACTCCGTACCTGCCTGCCCTCCAGCGCTGCCCTCTCTTGCAG
Seq C2 exon
CCAAGAGTAGAGCCATCTTGCTGCCGATGGATCTGGATGCCCACATGAGCGCTCTGCTCAGCAGTGGGGGCAGCTGCTCAGCCGCGGCCCAACGCAGCGCTGCCAACTACAAGACGGCCACGAGGACCTTCCCTCGGGTCATCCCCACCGCCAACCAGTGGGACTACAAGAACATCATTGAGAAGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052795:ENSRNOT00000090925:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCATCAGACAATTGTGGTTC
R:
TCTTGTAGTCCCACTGGTTGG
Band lengths:
292-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]