GgaINT0141536 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4452743-4453778:-
Coord C1 exon
chr26:4453658-4453778
Coord A exon
chr26:4452928-4453657
Coord C2 exon
chr26:4452743-4452927
Length
730 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
3' ss Seq
CCCTTCCCCCTGTCCCGCAGCCA
3' ss Score
10.01
Exon sequences
Seq C1 exon
ACCCACCAGACCATTGTGGTGCAGCTTCTCCAGTCCACCATGAGGCTGTTGGAGTGCTCCTGGCTGCAGCAGCAGCACAAGAGCTCAGTGGAGGCCTGCATCCGAACGCTGGCGATGGTTG
Seq A exon
GTAAGGAGCTGTGCCGGAGGGATGCTCTGCTCCCTGCCTGCCAGAGGGATGCAGCTGCTCTGGCTGCTTCTGCTCCAGCAGCAGGCAAGAGCCATCATCCCTACTGCAGCCATGGCAGGGTGCCCTTGGGGAGGCTGTCTGCTGGGAGCAGGGAGGTTTGGCTCTGGGATGTGCCTTTTGAGCTTGGTGTTATGTGTCCGGTTTGGCCAGAGGAGAGCTGAAGCTTGGGCTTGGTTGGGGAATTCCTGGTGTGTCCTTGCTGGTGCAGGGCCCAGAAAGAAAGCTGGCATTTTTGGCAGCTTTCCCTCGCCAGGACTTTGCCCTCAGCCTGCCTGCAGCTGCCTGACTCAGGACAAGCACTGAGTCACCACGTGGAAAGCATTGCGTGCTGGTTAGATGCTGGGTGGAGGCACTGGCCGGAGACGTAGGATTCCCCTTTGTAATTGCAGCCTCTCTGCACTGGGCTTTTCCAACTGAAAACCAGAGGCGGTGCCTCCTCCCACCCCATGGGCAGCAGGGGCTGTAGGCAATGGGTGCTGCACTGGGGAGAGATGGGTAGAAGTACCACAGCCCCCACCAGCCTGGAGGGCTTTTCTCTTGTATTTTATTCATATCTTCTTCACTGTAAATGAAGAGCGGGTGAAGGGGTGCCCAACCCGGGGCTGTGCAGTAGCTGATGTGGCAGCTGATAGCTCATGGCTGTCCCCAAACCCTTCCCCCTGTCCCGCAG
Seq C2 exon
CCAAGAGCCGCTCCATCGCGCTGCCCATGGACCTGGATGCCCACGTCAGCTCCCTGCTCAACAGCAGCTCCACCAGTACCGTGCAGAGGAACACGTCCAGCTACAAGACGGCCACGCGGACCTTCCCCCGCGTCTCCACCACCCCCAACCAGTGGGACTACAAGAACATCATAGAGAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.113
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCACCAGACCATTGTGG
R:
TGCAGCTTCTCTATGATGTTCTTGT
Band lengths:
305-1035
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]