DreINT0083752 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21300235-21300955:+
Coord C1 exon
chr8:21300235-21300312
Coord A exon
chr8:21300313-21300762
Coord C2 exon
chr8:21300763-21300955
Length
450 bp
Sequences
Splice sites
5' ss Seq
GAGGTATAG
5' ss Score
7.13
3' ss Seq
TATTGGTGTATCACATGCAGATT
3' ss Score
6.05
Exon sequences
Seq C1 exon
CTCAATCTGAACAAGCAGCAGGAGGAGGAAAAGGAGGATCCACTAGAGCACTACGACCGTCAAACTGCTCAGATTGAG
Seq A exon
GTATAGACAGTGTAGATTACAGTATAAATGCAGTCAAACCTCTGATATCATTTTTGACATGTTTTTATTAGTAGAAGCAGGATAATATAGTTCATTTATTTACAGCAAGACAGTATAGCCAATCAAAATCACATATTACAACCTACAATTATTCAAACAGTGGACTAAAACCAAACAGGAAGTTAAGTAATCTTTGATTGTTTAATTTCATACTGTAATTCTTTCCATACTGTACATTTCTACAGACGTTATCTGACATTATTCTGAGTTCTTTTCTATACTATAGTAAATAAACTGTGTTAATGTGAGCGGTATGAATAATTTTTGGTTTTTCTGCGTAGTATTTCTTTGCACTATAATCCTTGGTGTTATTGTAATTTCTGCTCATCTAGTGATTTAAATGAGTCTGATATTCCGTAAGGTGTTTTTCTATTGGTGTATCACATGCAG
Seq C2 exon
ATTGTTCGTGAAGATCGCAGCATGGAGCAGATTGTGTTTCCTGTTCACCCTATCTGTGAGTTTCTTACGGAGGAGTCAAAGTTTCGAGTGTTCACCACCACGGAGCAGGACGAGCAGGGCAGCAAAGTCACAAACTTCTTCGAGCAGACCTCCTTCCTCCACAACGAGATGGAATGGCAGAAAAAGCTTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAACAAGCAGCAGGAGGAG
R:
CGAAGCTTTTTCTGCCATTCCA
Band lengths:
263-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]