GgaINT0141549 @ galGal3
Intron Retention
Gene
ENSGALG00000003149 | ITPR3
Description
NA
Coordinates
chr26:4447132-4447785:-
Coord C1 exon
chr26:4447732-4447785
Coord A exon
chr26:4447325-4447731
Coord C2 exon
chr26:4447132-4447324
Length
407 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGA
5' ss Score
2.31
3' ss Seq
AGGGCATTTTATTCCTCCAGATT
3' ss Score
6.29
Exon sequences
Seq C1 exon
GAGGAGGAGGAGGACCCGCTGGCGTACTACGAGAAGCACACATCCCAGATTGAG
Seq A exon
GCAAGACCTGTTTGGGCTGCTAATACACACAGCTGATGGATCCCACGTGTGCTCCGGCTGTCTCGTGCCCCGTTATTCTGCACCAGGAGCCTTCCCAGCCCGGTGCCCATAGGAAGCAGCTGCAAAGAGCTGGAGACGTTAGCAGAGCCCATAGGGAGATGGGGGTACATGTGGACCCCCCAGGCCCTTCCTCCCTCTCCCCAGAGCAGATGGGATGCAGGCAGTGGGGCAGCCCCATCCTTGCTTGTTCCTCCCAGCATAGCCATGCAAGGATGTGTTTGCTGGGTCGAGTCGTAGTGTTAGATGAGCGGTGGTGATATTTGGATTTGGGGAGGTATGGCTGGGTGTAGAAAAGCAGGAAGCCCAGCACGATACGGGCAGGATGTAAGGGCATTTTATTCCTCCAG
Seq C2 exon
ATTGTGCGCCTGGACCGCAGCATGGAGCAGATAATCTTCCCAGTGCCTGGCATCTGCGAGTTCCTCACCAAGGAGACCAAGTACCGACTCTTCACCACGACGGAGCAGGATGAGCAGGGCAGCAAAGTCAGTGATTTCTTCGACCAGTCGTCCTTCCTCCACAACGAGATGGAGTGGCAGAAGAAACTGCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003149:ENSGALT00000004981:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.222 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGAGGAGGACCCG
R:
TCTTCTGCCACTCCATCTCGT
Band lengths:
238-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]