MmuINT0084575 @ mm10
Intron Retention
Gene
ENSMUSG00000042644 | Itpr3
Description
inositol 1,4,5-triphosphate receptor 3 [Source:MGI Symbol;Acc:MGI:96624]
Coordinates
chr17:27115673-27116078:+
Coord C1 exon
chr17:27115673-27115783
Coord A exon
chr17:27115784-27115885
Coord C2 exon
chr17:27115886-27116078
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGTGTCACCGGGCCAATCAGATT
3' ss Score
0.37
Exon sequences
Seq C1 exon
CTCAGCCTCAACAATAAGCAGCTGTCCCAGATGCTCAAGTCCTCGGCCCCCGCCCAGGAGGAGGAAGAGGACCCGCTGGCCTACTATGAGAATCACACCTCGCAGATTGAG
Seq A exon
GTGAGGTGGGAGAGACACTCACTGGGTGTGAGCTGGGGCAGGGGTGGAGGGGCGCGGTGAGGGCCTCTGCCCAGTGTGACCGGGTGTCACCGGGCCAATCAG
Seq C2 exon
ATTGTGCGGCAAGACCGAAGCATGGAGCAGATCGTGTTCCCGGTACCTGCCATCTGCCAGTTCCTGACAGAGGAGACGAAGCACCGGCTCTTCACCACCACTGAGCAGGACGAGCAGGGCAGCAAAGTGAGCGACTTCTTCGACCAGTCCTCCTTCCTGCACAACGAGATGGAGTGGCAGCGCCGGCTTCGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042644:ENSMUST00000049308:47
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.459 A=NA C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTCCCAGATGCTCAAGTC
R:
AGGAAGGAGGACTGGTCGAAG
Band lengths:
249-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types