DreINT0083760 @ danRer10
Intron Retention
Gene
ENSDARG00000061741 | itpr3
Description
inositol 1,4,5-trisphosphate receptor, type 3 [Source:ZFIN;Acc:ZDB-GENE-070605-1]
Coordinates
chr8:21311911-21312274:+
Coord C1 exon
chr8:21311911-21312032
Coord A exon
chr8:21312033-21312108
Coord C2 exon
chr8:21312109-21312274
Length
76 bp
Sequences
Splice sites
5' ss Seq
AATGTATGG
5' ss Score
3.37
3' ss Seq
CAGTGTTGTGTGGATTTCAGGAG
3' ss Score
6.07
Exon sequences
Seq C1 exon
AAGATGAAGACAACACTGAGAGAGCATGTGACACCCTTCTTATGTGTATTATTACGGTGCTGAATCATGGGCTGAGGAATGGAGGAGGTGTAGGAGATGTTCTGCGCAAACCATCTAAGAAT
Seq A exon
GTATGGTGAACACAACCGTATTCTGTATATAAATGCAAAATCAAAGCAAACTGATACAGTGTTGTGTGGATTTCAG
Seq C2 exon
GAGCCTTTGTTTCCCGCTCGTGTGGTGTATGACCTTCTCTTCTACTTTATTGTCATCATCATTGTTCTCAACTTGATTTTTGGTGTGATTATTGACACCTTCGCTGACCTGCGTAGTGAAAAACAGAAGAAAGAAGAAGTTCTGAAGACCACCTGTTTCATTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061741:ENSDART00000142836:44
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.7=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(12.8=51.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGCTGAGGAATGGAGGAG
R:
GTTTTTCACTACGCAGGTCAGC
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]